RNA id: CI01000113_00077172_00080517.mRNA


Basic Information

Item Value
RNA id CI01000113_00077172_00080517.mRNA
length 2702
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000113_00077172_00080517
representative False

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 75223 ~ 80517 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGGAAGACCAAGTGACGTGAGCGACAGGAGAAGATGGAGTGTGCGAGTACTTGAAAAAGGGAGCAAAAACATAAAGGAGAAGAGGAAGAGCAAGAGGGAGGGGGGATATGCCATTGGCAGCTCTCGCTTTCATTCAGTGATAACAGAACCCCTGGAGAGTAGCACTCTGGACAATGACATGATGATCATAGGGGGCACAGAGGAAAGGATTTGTGCCAGCTGGATGCTTGTTGCCTGTTCTGCGAGTGCACACCAACACCCTCGACGACTGCCTCTCTCTCTCCTTGCCCGGGCATTTAGCACCTGGCTGATTGCTGGATGCAGGGAGGGGGGTCAGAGGAGGGTGCATTACAGCGAACTGTGTCTCATCAGTCCCCGCTCTGACTCACAGAGATATTTAAGGGAGCATGTGGAACACTCTCTTCCAGCCGCTAGTGTCTTGGTGAAACCTCCTGATGTTCCCCCAAACGACATTCCACCGTTCTACCTATTCCCTCGAGACAGGCTGTGCCCTGTGTCACAGTCCCGCACAAACATGCAGGCAGTGCTGAAAGAGGCAGGTTGGCCAGGCTGCGCTTCCTGGCGTGAAGTCATCTTGCCGGACACCGTGCTCCAGTCAGATAAGAGAGCTAGGGATTACAGCAGATTATCTGACAGACAGGATCAGAAGCACCCCATTGAAAGTGTCCCAACAGTGAGAGCTCTACCATTACAGACAAGCCAGGCATCTGCCCTCAGGAAGAGGCTTTAAAGCCTTGATACCATTGATTCAACTGTACAGTCATTTCTGTGAGAGCCATTGAGAAGATTGCTTTTACTATCTATATTATGGCTGGATGCTTTTCCAAATTCCATATAAGCCTCAGCTTTGTGCATGGAGTGACTCTTCTGTGGTGCGCGAAGTCAGAGTCCTGTACAGACATGATAGGCTGCCACAAACTTGTTTTACTACCATCCTGCTCACTGTCTATTTCCGATTTCCCTGAGCAACACCGCATCATTCATTCGTGCTGTTATTTGTCTTTTGCTTGATATCTCTATTTTCATGCAAATCCTCATGGGATACCTATCAGTTCGTATTAGCCAAATGATTTCAGCACACTCCTTACTTCAAAAACAGTACCCCGTCTTTGCTATAAATACACCCCAGAAAATTTTGTCAGCATTTACACATCTACATGTCATTCCAAATGTCACTTTCTTTCTTCCACAGAAGACAAAAAGAGAAGTCTGGGCTTAAAGGCTGAAACTTTCAAGCTTTAAAAGGACATAAAACCATTAAAGTATTATAACAGTTGTACACTATAGTCCAAGGCTTCTGAAGTCATATGGTAGCTTTGTGTGATAAACAAAAGTCTTAATTTACTTAATTGAGTCTTAATCCACAGAAAATCCTGACATCCGCCCAACTCTCCTTGGTGCGCTCATGAGAAAAGAAATGATGCCTGATTCATAAACTAATTGTTTGAGTCAGACCTTTTAAATTAATCGGATGATCTGGTTTATAAAACCAGTCTGCATTATTTATTTACTATACTGAAAGGGTTAGTTCACCCAGAAATTCTGTCATTAATTACTCACCCTCATGTCGTTGCACAAGCATAAGACCTTCGTTCATCTTCAGAATACAAATTAAGATATTTTCATAAAATCCGATGGCTCAGTGAGGCCTCCATTGCCAGCAAGACAATTAACACTTTCAATGCCCAGAAAGCTACTAAAAACGTATTTAAAACAGTTAATGTGAGTACAGTGGTTCAACCTTAATGTTATGAGCGAAGAGAATACTTTTTGTGCACCAAAAAAAAAACAAATAACGACTTTATTCAACAATATCTAGTGATGGGCGATTTCAAAACACTGCATGAAGCTTCGAAGCTTTACGAATCTTTTGTTTTGAACCAAACTACCAAAGTCACGTGATTTCAGTAAACGAGGCTTCGTCACATCATAAGTGTTTCGAAATTTCAGTAGTTCACCACTGGGGGGCATGAGTTTGGCAGTTTGATATTGCCTCCGAACCACTGATTCGAAACAAAAGATTTGTAAATCTTCAAACTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTCACCAATTTTTTTTTTTGTTTTTTTTTGCCGCACAAAAAGTATTCTCATTGCTTCATAACATTAAGGTTGAACCACTGTAGTCACACAAACTGTTTTAAATACATCTTTAGCTTTCTGGTCATTGAAAGTGTTAATTGCCTTGCTGGCAATGGAGGCCTCATTGAGCCATTGTGAAAAATATCTTAATTTGTGTTCTGAAGATGAATGAAGGTCTTATGAGTGTAGAACGAAATAAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTGAAGATTGTTAGTGAATAACAATATAAATTTTAAACTGTATCTCACACAACTTCTCATGACTTTTATGCTGATTTTGCATATCTTTTTGAAGCTTTAAAGTATCAGTCGCCATTCATTGTAATTGAATGGAAAAGATGATCCAGTCTTGCAGTTTCATCTTTTGTGTTCCAGGGAACAAAGACAGTCATACAAGTTTAGAACAATTATCTTATTGCTTAAAATTATTGCTTAAAATCGTTCAAAAATGATGCCTAAAATATAATCCTTGTTGTGAACAGTGTTCATTTCATATGCGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377693 lncRNA downstream 2884 72081 ~ 72339 (-) True G332223
TU377686 lncRNA downstream 14466 60326 ~ 60757 (-) True G332217
TU377685 lncRNA downstream 15633 59245 ~ 59590 (-) True G332216
TU377684 lncRNA downstream 19108 55816 ~ 56115 (-) True G332215
TU377683 lncRNA downstream 21039 53806 ~ 54184 (-) False G332214
TU377699 lncRNA upstream 1383 81900 ~ 82116 (-) True G332229
TU377700 lncRNA upstream 2420 82937 ~ 83461 (-) True G332230
TU377701 lncRNA upstream 3025 83542 ~ 83843 (-) True G332231
TU377734 lncRNA upstream 129064 209581 ~ 210858 (-) True G332264
TU377753 lncRNA upstream 156533 237050 ~ 239053 (-) True G332283
CI01000113_00122344_00130639.mRNA mRNA upstream 41337 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00254945_00255661.mRNA mRNA upstream 174341 254858 ~ 255709 (-) True CI01000113_00254945_00255661
CI01000113_00268929_00271262.mRNA mRNA upstream 188331 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00283931_00284691.mRNA mRNA upstream 203345 283862 ~ 284723 (-) True CI01000113_00283931_00284691
CI01000113_00301490_00302258.mRNA mRNA upstream 220891 301408 ~ 302281 (-) True CI01000113_00301490_00302258
TU377671 other downstream 25738 47990 ~ 49485 (-) False G332210
TU377621 other upstream 309710 390227 ~ 446837 (-) True G332160
TU378176 other upstream 2066697 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 2170328 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2287099 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile