RNA id: CI01000113_00254945_00255661.mRNA


Basic Information

Item Value
RNA id CI01000113_00254945_00255661.mRNA
length 567
RNA type mRNA
GC content 0.52
exon number 3
gene id CI01000113_00254945_00255661
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 254858 ~ 255709 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTTTTTTTCTGAAGACGATCTAACTTGAGAAAAAGAAGACGCAGCAATGAGTCTCTCTGATAAGGACAAGGCTGTTGTGAAGGCCATATGGGCTAAGATCAGCTCTAGGGCCGATGACATCGGCGCTGAAGCCCTCGGCAGGATGCTGACCGTCTACCCTCAGACCAAGACCTACTTCTCTCACTGGGCTGACCTGAGCCCCGGGTCTGGTCCTGTGAAGAAGCACGGCCACGTTATCATGGCTGCAGTCGGCGATGCCGTTTCAAAAATAGACGACCTTGCGGGAGGTCTGGCCGCCCTGAGCGAACTTCATGCTTTCAAGCTGCGTGTTGACCCGGCCAACTTCAAGATCCTCGCACACAATCTCATAGTGGTCATCGCCATGCTCTTCCCTGCCGACTTCACCCCAGAGGTTCATGTGTCAGTTGACAAGTTTTTCCAGAACTTGGCCCTGGCTCTTTCTGAGAAGTACCGCTAATCCTCCAGTGGGCATCCACAGGCAACACTGCAGCACGGCACCTCTAACCAACTCATGCATGATGTCTGAATAATATTTCTCAATAAA

Function

GO:

id name namespace
GO:0005344 oxygen carrier activity molecular_function

KEGG:

id description
K13826 HBZ; hemoglobin subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377753 lncRNA downstream 15805 237050 ~ 239053 (-) True G332283
TU377734 lncRNA downstream 44000 209581 ~ 210858 (-) True G332264
TU377701 lncRNA downstream 171015 83542 ~ 83843 (-) True G332231
TU377700 lncRNA downstream 171397 82937 ~ 83461 (-) True G332230
TU377699 lncRNA downstream 172742 81900 ~ 82116 (-) True G332229
TU377611 lncRNA upstream 1115 256824 ~ 327004 (-) False G332152
TU377612 lncRNA upstream 1115 256824 ~ 327004 (-) False G332152
TU377613 lncRNA upstream 1115 256824 ~ 327004 (-) True G332152
TU377619 lncRNA upstream 21654 277363 ~ 334616 (-) True G332158
TU377783 lncRNA upstream 118308 374017 ~ 374294 (-) True G332312
CI01000113_00122344_00130639.mRNA mRNA downstream 124151 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00077172_00080517.mRNA mRNA downstream 174341 75223 ~ 80517 (-) False CI01000113_00077172_00080517
CI01000113_00268929_00271262.mRNA mRNA upstream 13139 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00283931_00284691.mRNA mRNA upstream 28153 283862 ~ 284723 (-) True CI01000113_00283931_00284691
CI01000113_00301490_00302258.mRNA mRNA upstream 45699 301408 ~ 302281 (-) True CI01000113_00301490_00302258
CI01000113_00308045_00308457.mRNA mRNA upstream 52195 307904 ~ 308514 (-) True CI01000113_00308045_00308457
CI01000113_00324040_00324756.mRNA mRNA upstream 68242 323951 ~ 324804 (-) True CI01000113_00324040_00324756
TU377671 other downstream 205373 47990 ~ 49485 (-) False G332210
TU377621 other upstream 134518 390227 ~ 446837 (-) True G332160
TU378176 other upstream 1891505 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 1995136 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2111907 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile