RNA id: CI01000113_00324040_00324756.mRNA


Basic Information

Item Value
RNA id CI01000113_00324040_00324756.mRNA
length 569
RNA type mRNA
GC content 0.52
exon number 3
gene id CI01000113_00324040_00324756
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 323951 ~ 324804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTTTTTTTCTGAAGACGATCTAACTTGAGAAAAAGAAGACGCAGCAATGAGTCTCTCTGATAAGGACAAGGCTGTTGTAAAGGCCCTATGGTCTAAGATCAGCTCTAAGGCCGATGAAATCGGCGCTGAAGCCCTCGGCAGGATGCTGACCGTCTACCCTCAGACCAAGACCTACTTCTCTCACTGGGCTGACCTGAGCCCCGGGTCTGGTCCTGTGAAGAAGCACGGCAAGGTTATCGTGGCTGCAGTCGGCGATGCCGTTTCAAAAATAGACGACCTTGCGGGAGGTCTGGCCGCCCTGAGCGAACTTCATGCTTTCAAGCTGCGTGTTGACCCGGCCAACTTCAAGATCCTCGCACACAATCTCATAGTGGTCATCGCCATGCTCTTCCCTGCCGACTTCACCCCAGAGGTTCATGTGTCAGTTGACAAGTTTTTCCAGAACTTGGCCCTGGCTCTTTCTGAGAAGTACCGCTAATCCTCCAGTGGGCATCCACAGGCAACACTGTGCGGCACGGCACCTCTAACCAACTCATGCATGATGTCTGAATGATATTTCTCAATAAA

Function

GO:

id name namespace
GO:0005344 oxygen carrier activity molecular_function

KEGG:

id description
K13826 HBZ; hemoglobin subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377755 lncRNA downstream 28437 242581 ~ 295514 (-) True G332284
TU377634 lncRNA downstream 29729 240390 ~ 294222 (-) True G332173
TU377753 lncRNA downstream 84898 237050 ~ 239053 (-) True G332283
TU377734 lncRNA downstream 113093 209581 ~ 210858 (-) True G332264
TU377701 lncRNA downstream 240108 83542 ~ 83843 (-) True G332231
TU377783 lncRNA upstream 49213 374017 ~ 374294 (-) True G332312
TU377784 lncRNA upstream 49682 374486 ~ 374692 (-) True G332313
TU377826 lncRNA upstream 123146 447950 ~ 448335 (-) True G332344
TU377829 lncRNA upstream 127344 452148 ~ 452348 (-) True G332346
TU377830 lncRNA upstream 127951 452755 ~ 453096 (-) True G332347
CI01000113_00308045_00308457.mRNA mRNA downstream 15437 307904 ~ 308514 (-) True CI01000113_00308045_00308457
CI01000113_00301490_00302258.mRNA mRNA downstream 21670 301408 ~ 302281 (-) True CI01000113_00301490_00302258
CI01000113_00283931_00284691.mRNA mRNA downstream 39228 283862 ~ 284723 (-) True CI01000113_00283931_00284691
CI01000113_00268929_00271262.mRNA mRNA downstream 52657 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00254945_00255661.mRNA mRNA downstream 68242 254858 ~ 255709 (-) True CI01000113_00254945_00255661
CI01000113_00332256_00333023.mRNA mRNA upstream 7367 332171 ~ 333055 (-) True CI01000113_00332256_00333023
CI01000113_00355640_00360687.mRNA mRNA upstream 30472 355276 ~ 360820 (-) True CI01000113_00355640_00360687
CI01000113_00449242_00453843.mRNA mRNA upstream 124120 448924 ~ 453843 (-) True CI01000113_00449242_00453843
CI01000113_00461761_00471457.mRNA mRNA upstream 136957 461761 ~ 471457 (-) True CI01000113_00461761_00471457
CI01000113_00473025_00476254.mRNA mRNA upstream 147328 472132 ~ 478063 (-) True CI01000113_00473025_00476254
TU377671 other downstream 274466 47990 ~ 49485 (-) False G332210
TU377621 other upstream 65423 390227 ~ 446837 (-) True G332160
TU378176 other upstream 1822410 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 1926041 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2042812 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile