RNA id: CI01000113_00332256_00333023.mRNA


Basic Information

Item Value
RNA id CI01000113_00332256_00333023.mRNA
length 549
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000113_00332256_00333023
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 332171 ~ 333055 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCTCTAATACCGAATTGGAAAGGATCGAGAAATGAGTCTGACAGCTAAGGATAAAGCCTTGGTCAAGGCCTTCTGGGGTAAAATCTCTAGTAAGGCCGACGCCATAGGCCAAGAAGCTCTGGGAAGAATGCTTATTGTGTACCCTCAGACTAAAATATATTTTCATGATTGGACTGATCATTCTGTCAGCTCTCCCCAAGTGAAGAAACACGGCAAAACTGTGATGACAGCCATCACTGATGCTGTGGGCAAAATGGATGATCTTATTGGTGGAATGAGCGCCTTGAGTGAAATCCATGCCACTAAGTTGCGCATTGACCCTGTAAACTTCAAGATTCTGTCCCATAACATCCTCGTGACTCTTGCAGTTCATTTCCCCGCTGACTTCACCGCAGAAGTGCACGTGTCCGTGGACAAGTTTCTCGCGGCTCTGTCTGCTGCCCTCGCTGATAAATACAGATAAAATCATCATTCAGGGGCTTCTCGTTTATCTGCAAACAGAGCTACTTGAAATAATGAAAAGTAAAATATCAGACGCAATCAATAAA

Function

GO:

id name namespace
GO:0005344 oxygen carrier activity molecular_function

KEGG:

id description
K13826 HBZ; hemoglobin subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377611 lncRNA downstream 5167 256824 ~ 327004 (-) False G332152
TU377612 lncRNA downstream 5167 256824 ~ 327004 (-) False G332152
TU377613 lncRNA downstream 5167 256824 ~ 327004 (-) True G332152
TU377755 lncRNA downstream 36657 242581 ~ 295514 (-) True G332284
TU377634 lncRNA downstream 37949 240390 ~ 294222 (-) True G332173
TU377783 lncRNA upstream 40962 374017 ~ 374294 (-) True G332312
TU377784 lncRNA upstream 41431 374486 ~ 374692 (-) True G332313
TU377826 lncRNA upstream 114895 447950 ~ 448335 (-) True G332344
TU377829 lncRNA upstream 119093 452148 ~ 452348 (-) True G332346
TU377830 lncRNA upstream 119700 452755 ~ 453096 (-) True G332347
CI01000113_00324040_00324756.mRNA mRNA downstream 7367 323951 ~ 324804 (-) True CI01000113_00324040_00324756
CI01000113_00308045_00308457.mRNA mRNA downstream 23657 307904 ~ 308514 (-) True CI01000113_00308045_00308457
CI01000113_00301490_00302258.mRNA mRNA downstream 29890 301408 ~ 302281 (-) True CI01000113_00301490_00302258
CI01000113_00283931_00284691.mRNA mRNA downstream 47448 283862 ~ 284723 (-) True CI01000113_00283931_00284691
CI01000113_00268929_00271262.mRNA mRNA downstream 60877 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00355640_00360687.mRNA mRNA upstream 22221 355276 ~ 360820 (-) True CI01000113_00355640_00360687
CI01000113_00449242_00453843.mRNA mRNA upstream 115869 448924 ~ 453843 (-) True CI01000113_00449242_00453843
CI01000113_00461761_00471457.mRNA mRNA upstream 128706 461761 ~ 471457 (-) True CI01000113_00461761_00471457
CI01000113_00473025_00476254.mRNA mRNA upstream 139077 472132 ~ 478063 (-) True CI01000113_00473025_00476254
CI01000113_00489480_00490623.mRNA mRNA upstream 156425 489480 ~ 490736 (-) True CI01000113_00489480_00490623
TU377671 other downstream 282686 47990 ~ 49485 (-) False G332210
TU377621 other upstream 57172 390227 ~ 446837 (-) True G332160
TU378176 other upstream 1814159 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 1917790 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2034561 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile