Item | Value |
---|---|
RNA id | TU378000 |
length | 540 |
lncRNA type | sense_over |
GC content | 0.33 |
exon number | 1 |
gene id | G332488 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000113 |
NCBI id | null |
chromosome length | 2886875 |
location | 1253733 ~ 1254272 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU378042 | lncRNA | downstream | 7160 | 1246293 ~ 1246573 (-) | True | G332523 |
TU378095 | lncRNA | downstream | 13777 | 1239671 ~ 1239956 (-) | True | G332574 |
TU378043 | lncRNA | downstream | 135186 | 1117811 ~ 1118547 (-) | True | G332524 |
TU377965 | lncRNA | downstream | 276210 | 977300 ~ 977523 (-) | True | G332458 |
TU377930 | lncRNA | downstream | 383994 | 863334 ~ 869739 (-) | True | G332427 |
TU378108 | lncRNA | upstream | 152410 | 1407820 ~ 1408432 (-) | True | G332587 |
TU378118 | lncRNA | upstream | 287824 | 1543234 ~ 1543454 (-) | True | G332596 |
TU378119 | lncRNA | upstream | 288780 | 1544190 ~ 1544419 (-) | True | G332597 |
TU378120 | lncRNA | upstream | 289956 | 1545366 ~ 1545584 (-) | True | G332598 |
TU378121 | lncRNA | upstream | 290593 | 1546003 ~ 1546223 (-) | True | G332599 |
CI01000113_01208541_01221483.mRNA | mRNA | downstream | 31650 | 1207889 ~ 1222083 (-) | True | CI01000113_01208541_01221483 |
CI01000113_01180049_01192316.mRNA | mRNA | downstream | 61417 | 1179836 ~ 1192316 (-) | True | CI01000113_01180049_01192316 |
CI01000113_01137145_01178626.mRNA | mRNA | downstream | 75107 | 1136997 ~ 1178626 (-) | True | CI01000113_01137145_01178626 |
CI01000113_01096667_01106622.mRNA | mRNA | downstream | 146863 | 1096322 ~ 1106870 (-) | True | CI01000113_01096667_01106622 |
CI01000113_00907179_00957938.mRNA | mRNA | downstream | 295639 | 906941 ~ 958094 (-) | True | CI01000113_00907179_00957938 |
CI01000113_01259501_01275141.mRNA | mRNA | upstream | 3728 | 1259138 ~ 1275141 (-) | True | CI01000113_01259501_01275141 |
CI01000113_01351820_01359750.mRNA | mRNA | upstream | 96002 | 1351412 ~ 1361658 (-) | True | CI01000113_01351820_01359750 |
CI01000113_01396970_01402406.mRNA | mRNA | upstream | 141021 | 1396431 ~ 1402406 (-) | True | CI01000113_01396970_01402406 |
CI01000113_01404787_01423732.mRNA | mRNA | upstream | 149256 | 1404666 ~ 1423732 (-) | True | CI01000113_01404787_01423732 |
CI01000113_01432095_01456239.mRNA | mRNA | upstream | 176576 | 1431986 ~ 1456239 (-) | True | CI01000113_01432095_01456239 |
TU377621 | other | downstream | 806896 | 390227 ~ 446837 (-) | True | G332160 |
TU377671 | other | downstream | 1204248 | 47990 ~ 49485 (-) | False | G332210 |
TU378176 | other | upstream | 891804 | 2147214 ~ 2148558 (-) | True | G332649 |
TU378382 | other | upstream | 995435 | 2250845 ~ 2251213 (-) | True | G332837 |
TU378401 | other | upstream | 1112206 | 2367616 ~ 2368331 (-) | True | CI01000113_02356565_02370009 |