RNA id: TU378000



Basic Information


Item Value
RNA id TU378000
length 540
lncRNA type sense_over
GC content 0.33
exon number 1
gene id G332488
representative True

Chromosome Information


Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1253733 ~ 1254272 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGTTTAGCGCGGACTTTTATTTTGACATCTTGAAAACAGGAAGTTCCTGGATGCGTGACTGTCGAACTGTAGGACATGGGGGTTAAAATAGAGGTTTTTAGGATGATGGTGTATCTGTCGTTTCCAGTGGCGATGTTTTGGATATCAAACCAAGCAGAGTATTTTGAGGAATACATCGTGAAGCGGAAGAGGGAGATTTTCCCACCTGATGAGAAAATGCATAGGCAAGAACTGGAGAATTTCAAAGAGCGCATGAGAAACCGGAGAGAGCAGAAGATGCTGAAACAGATGGCCTTGGAGTCTGAGGAATGACTATAAAAACAACATAAAACAACAAAACTATTGCTTATAATGTAACTTCGGGATCAAGCCTTCATGTGTGACATAAGAACACTGTAATGCTTCTCCCAAAGTGTCAGACCATAGTTAAAACTTTAATGTGAATATTGTTTCTGGACATAGTTTAATAAATGGGTGGGGAAAATGTATATTTTTTGTAAATATATAAGTCTTTAAACAGTTAGAATTGAGTGGTTTGACTTTATTGTGTGTATAGCTTTACATTCTTAATGAATAAATAAGAACACTGCTTTTTGTTTTTGCTGTTGATTTATTTTTTCCAATTTGAAAATAAATATAAAGGAATTTCTTTTTTAATCTTGTTTGTTGTCATGTTTTTTATTCAATTTTAATATGTAAGTATTATACATTTTGTCATATTTGGTATTTGCATGTTGTAATAGGGTGTTATTTAAAGTACAA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU378042 lncRNA downstream 7160 1246293 ~ 1246573 (-) True G332523
TU378095 lncRNA downstream 13777 1239671 ~ 1239956 (-) True G332574
TU378043 lncRNA downstream 135186 1117811 ~ 1118547 (-) True G332524
TU377965 lncRNA downstream 276210 977300 ~ 977523 (-) True G332458
TU377930 lncRNA downstream 383994 863334 ~ 869739 (-) True G332427
TU378108 lncRNA upstream 152410 1407820 ~ 1408432 (-) True G332587
TU378118 lncRNA upstream 287824 1543234 ~ 1543454 (-) True G332596
TU378119 lncRNA upstream 288780 1544190 ~ 1544419 (-) True G332597
TU378120 lncRNA upstream 289956 1545366 ~ 1545584 (-) True G332598
TU378121 lncRNA upstream 290593 1546003 ~ 1546223 (-) True G332599
CI01000113_01208541_01221483.mRNA mRNA downstream 31650 1207889 ~ 1222083 (-) True CI01000113_01208541_01221483
CI01000113_01180049_01192316.mRNA mRNA downstream 61417 1179836 ~ 1192316 (-) True CI01000113_01180049_01192316
CI01000113_01137145_01178626.mRNA mRNA downstream 75107 1136997 ~ 1178626 (-) True CI01000113_01137145_01178626
CI01000113_01096667_01106622.mRNA mRNA downstream 146863 1096322 ~ 1106870 (-) True CI01000113_01096667_01106622
CI01000113_00907179_00957938.mRNA mRNA downstream 295639 906941 ~ 958094 (-) True CI01000113_00907179_00957938
CI01000113_01259501_01275141.mRNA mRNA upstream 3728 1259138 ~ 1275141 (-) True CI01000113_01259501_01275141
CI01000113_01351820_01359750.mRNA mRNA upstream 96002 1351412 ~ 1361658 (-) True CI01000113_01351820_01359750
CI01000113_01396970_01402406.mRNA mRNA upstream 141021 1396431 ~ 1402406 (-) True CI01000113_01396970_01402406
CI01000113_01404787_01423732.mRNA mRNA upstream 149256 1404666 ~ 1423732 (-) True CI01000113_01404787_01423732
CI01000113_01432095_01456239.mRNA mRNA upstream 176576 1431986 ~ 1456239 (-) True CI01000113_01432095_01456239
TU377621 other downstream 806896 390227 ~ 446837 (-) True G332160
TU377671 other downstream 1204248 47990 ~ 49485 (-) False G332210
TU378176 other upstream 891804 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 995435 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 1112206 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile