RNA id: TU378126


Basic Information

Item Value
RNA id TU378126
length 465
lncRNA type sense_over
GC content 0.39
exon number 1
gene id CI01000113_01569971_01571224
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1569308 ~ 1571802 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTAATCAAATAAAAGGCCACTTTAATTGTACTGAAAGAAAGTACACTTTAATGACTATATTTCCAAAAGCTGCAGTCCGTAACTTTTTTTGGTTAATGATCCAAAATAAATTTTTGAGCAAGTACATAACCAGCCAGTGTTCAAAACTATCTCCTTACCTTAGCCCGATTCACAGCGGTAAGCTTGTAATATTGTTTTCTAATTCGGGTGATACTGGTAGGTTTCCGCACACTTCCAAGATGTAGAATCTGTGATTCTGAAGTACAGTATCCACATCGGTGTGGTGACTGACAGCAAACATTCGATTCATCCGCGCTGAGGAGCCGTGCCGAGGCACAACCCACATAAAGATGATAATTCCGCAAATAACTGCAACTGCAGGTTTCAAACAGAGATCACAAAACGTATGGACTGCAGCTTTAACACAATTAAATATGCGCTAAAAAGTCAAATACATAAGCCC

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04258 PTGER1; prostaglandin E receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378123 lncRNA downstream 21773 1547128 ~ 1547535 (-) True G332601
TU378122 lncRNA downstream 22544 1546417 ~ 1546764 (-) True G332600
TU378121 lncRNA downstream 23085 1546003 ~ 1546223 (-) True G332599
TU378120 lncRNA downstream 23724 1545366 ~ 1545584 (-) True G332598
TU378119 lncRNA downstream 24889 1544190 ~ 1544419 (-) True G332597
TU378134 lncRNA upstream 16254 1586026 ~ 1586275 (-) True G332611
TU378147 lncRNA upstream 75228 1645000 ~ 1645350 (-) True G332621
TU378148 lncRNA upstream 88953 1658725 ~ 1658938 (-) True G332622
TU378149 lncRNA upstream 92984 1662756 ~ 1662984 (-) True G332623
TU378150 lncRNA upstream 93253 1663025 ~ 1663256 (-) True G332624
CI01000113_01554726_01565897.mRNA mRNA downstream 3411 1554144 ~ 1565897 (-) True CI01000113_01554726_01565897
CI01000113_01502427_01506373.mRNA mRNA downstream 62935 1502161 ~ 1506373 (-) True CI01000113_01502427_01506373
CI01000113_01480199_01500090.mRNA mRNA downstream 69037 1479477 ~ 1500271 (-) True CI01000113_01480199_01500090
CI01000113_01458405_01476967.mRNA mRNA downstream 92341 1458405 ~ 1476967 (-) True CI01000113_01458405_01476967
CI01000113_01432095_01456239.mRNA mRNA downstream 113069 1431986 ~ 1456239 (-) True CI01000113_01432095_01456239
CI01000113_01589305_01600983.mRNA mRNA upstream 19382 1589154 ~ 1601012 (-) True CI01000113_01589305_01600983
CI01000113_01652528_01653349.mRNA mRNA upstream 82614 1652386 ~ 1653446 (-) True CI01000113_01652528_01653349
CI01000113_01846674_01851715.mRNA mRNA upstream 276596 1846368 ~ 1851790 (-) True CI01000113_01846674_01851715
CI01000113_01854931_01857730.mRNA mRNA upstream 284994 1854766 ~ 1858875 (-) True CI01000113_01854931_01857730
CI01000113_01871256_01883265.mRNA mRNA upstream 300618 1870390 ~ 1884400 (-) True CI01000113_01871256_01883265
TU377621 other downstream 1122471 390227 ~ 446837 (-) True G332160
TU377671 other downstream 1519823 47990 ~ 49485 (-) False G332210
TU378176 other upstream 577442 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 681073 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 797844 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile