RNA id: TU377225



Basic Information


Item Value
RNA id TU377225
length 126
lncRNA type read_through
GC content 0.37
exon number 1
gene id G331821
representative True

Chromosome Information


Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2136540 ~ 2136665 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGAACATTTGAGCTCTACACAACAAACCGAATAGACTCATGAGGGTGCAAGTCTAAGGTTGAGCAGCAGTGATGGACGTATACTGCAGTAATAACGTTCTTCAGGCCAGGAGAACCGTGGAGCAGCTGAGACTGGAGACAGAACTGCAAAGAATCAAGATTTCAGCAGCAGCAGAGCAGATTGTTCAGTACTGTCAGGAACACAGGAGAGCCGATCCACTCCTCACCGGGATCGCCGCATCCTCCAACCCGTTCAAAGACAAGAAGACATGCGTGCTGCTGTGAGCAGCACCTTACAGCTATCGAATCACCAATCTTCCTTTTTATTTGTGTTGAAATGACACCTTGACAAATACAACTGAACTATCAAATTGTACATTTAAAAAGCTTTAAAAAAAACAAAAACAATCAGCAATCAAACAAAAAAAGAGATTTTGATCACAGGACATTCAGTCAGTCACAGAGCAATACCACAGCACCGTCTGCAGTAATTATAAATAAATCATAAATATTGACATTTTTAAATTAGACTATTTAGTAATTTGTTATGGTCTTGAAGTGTTCCCTCACAGTGCATTCATTTTAAAGCATGGTGCCTCATTTTTAAACTGTATACTTGTATAAGTGCACTGACAAGTATACAAAAACAAACTGAATCACACCAGTTTTTAATAACCGATTTCCTAGTTTGTGTATTACACATCTAGAGAGCTAAATACTGAAAACTGATTGATAATGATTCTTGTTTGTACTCATATAACTTCACTGTATTATACTGTAGATGTGCTACAGAATTCACAGCATGTCTAAGTACGTTGTTAACATCAATTTTGTTGAAATTTCAAGTAATGATCACACAAGCAAACTGGAAACAAATATAAAGTAAATTGTAAAGAAAACAGTAGTGGTGTTCCTGTTACGAGGCACTGAAATGTTTAGTGTGCTATCGTAGTGCGAACGCTTCATGGAGATCCATGGACAACTGGGAATGTCAAGTTTTTGTTTCTACAAACATGTGTCAGACACCTAAAACATTCGTTTTCATCTTTTCCCCAATAAAAGCAACACATGAATGTATAATGCATTGGTAGATTGCTAGAAATACAGAGTTAAAGAACTGATTGGTTCCTATTGTTCCCTGGATTCAAATGCTTTTTAAACTCTCAGATTCGGGGCCTCCAAACCTCCACATTCATGTCACCAGAAGCGATGGCCAGCGTTCCTCCTTCAACACTTAACTGGAAAGAGAAAAATGACGAGCCTTTATTCATTGCTGGCAGTACAGATAACGGCTAGATAAGAGTAATAATGGTATAATCCAACAGAAATATTGATTAGGCATACAGATTAACATTCACTTCCATTCAAACATTCATCTCAGCATCTTAGATGACATATAGACTGTGCACTGGTAGAAATGTGTCAGCCATATACCATGGTATATCTATTTTATGATGGCTTTAAATGTGGCTCATCCAATCAGATTTATAATGTGTTTTGTTTTTTTAAGTATTTTTTAATTCAAGTGCTGTGAAGTCAATTTTGCTTTGTTTCCAGGCAAATCATTTGTTTTGAATAATCATATTTTTTTTGGTTTGCATCCATCAAATTCCAATGAAATGAGGTTAAGTAT

Function


GO: NA

KEGG:

id description
K04347 GNG12; guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU377219 lncRNA upstream 11927 2118370 ~ 2120959 (+) True CI01000113_02111396_02122911
TU377222 lncRNA upstream 14637 2117935 ~ 2118249 (+) True G331818
TU377220 lncRNA upstream 15735 2112683 ~ 2117151 (+) True G331816
TU377326 lncRNA upstream 26269 2106279 ~ 2106617 (+) True G331914
TU377319 lncRNA upstream 60549 2071535 ~ 2072337 (+) True G331907
TU377235 lncRNA downstream 17052 2153717 ~ 2154117 (+) True G331831
TU377352 lncRNA downstream 110306 2246971 ~ 2247424 (+) True G331937
TU377355 lncRNA downstream 113269 2249934 ~ 2250354 (+) True G331939
TU377394 lncRNA downstream 221524 2358189 ~ 2359966 (+) True G331971
TU377366 lncRNA downstream 226909 2363574 ~ 2365297 (+) True G331948
CI01000113_02111396_02122911.mRNA mRNA upstream 9849 2110635 ~ 2123037 (+) False CI01000113_02111396_02122911
CI01000113_02059842_02092732.mRNA mRNA upstream 39223 2059842 ~ 2093663 (+) True CI01000113_02059842_02092732
CI01000113_02042831_02055567.mRNA mRNA upstream 76762 2039998 ~ 2056124 (+) True CI01000113_02042831_02055567
CI01000113_01994682_02001599.mRNA mRNA upstream 130858 1994682 ~ 2002028 (+) True CI01000113_01994682_02001599
CI01000113_01983091_01989335.mRNA mRNA upstream 143551 1983091 ~ 1989335 (+) True CI01000113_01983091_01989335
CI01000113_02147391_02148242.mRNA mRNA downstream 10726 2147391 ~ 2148434 (+) True CI01000113_02147391_02148242
CI01000113_02156565_02157428.mRNA mRNA downstream 19562 2156227 ~ 2157464 (+) True CI01000113_02156565_02157428
CI01000113_02166259_02170108.mRNA mRNA downstream 29594 2166259 ~ 2170275 (+) True CI01000113_02166259_02170108
CI01000113_02183987_02191396.mRNA mRNA downstream 46895 2183560 ~ 2191503 (+) True CI01000113_02183987_02191396
CI01000113_02203100_02206995.mRNA mRNA downstream 66435 2203100 ~ 2207083 (+) True CI01000113_02203100_02206995
TU377135 other upstream 303983 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 350585 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 439016 1668002 ~ 1668035 (+) True G331759
TU377162 other upstream 469631 1662785 ~ 1663255 (+) True G331767
TU376908 other upstream 707180 1424561 ~ 1425441 (+) True G331578
TU377377 other downstream 206756 2351665 ~ 2351870 (+) True G331958
TU377442 other downstream 432102 2568767 ~ 2587700 (+) True G332006

Expression Profile