RNA id: CI01000113_02418950_02434326.mRNA



Basic Information


Item Value
RNA id CI01000113_02418950_02434326.mRNA
length 2302
RNA type mRNA
GC content 0.49
exon number 16
gene id CI01000113_02418950_02434326
representative True

Chromosome Information


Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2418950 ~ 2434456 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGCCTGTTCAGGAGTGGGGCGAGGAGCATGAAGACGGGGCAGTGTTTGGGATCACCCTGCGCAGAGAGCCAGTCCAGCAGTCATCTGAGCCCACAGAGGCTTTCGTTCAGTACCGCACATGTAAAGTGCGCAGGTTAAAAGCGGCCACGCTGGACAGGCTGGTCTCTCACCTTCTGGACCCCTGCTGTCAGGAGCAAGACTACGGCAGGATACTGCTGTCAACGTATCGCACCTTTACCAGCTCCAACAAACTCATCGAGATGCTCTTCCAGAGGGAGAACTTTGCCTCTGCACTTGACAGCACCAATTACCCTAACAGCTCTTTGTGGAGTTTGCTTCAGATGTGGTTGGATGAGTACAGCGATGATTTCAGGGAGCCTCCCATGCACTCTTCCCTGCGTCTCATGTGTTTACAGCTGAGAGGACGCCCTTCTCTCTTCCCCCTGGCTAAACACTATGAAGCTCTCCTGAAGAAATTCCAGACTGAAGATGTTGTGACAGGTTGTCCAGTTGATCATATGGATGAACCAGCCTTGAATATGGAGGCAAAAGACTTTGAGTCAGAAAACCTTGCAGATTTCATGGATTTCTCCATCACAGATGTTGCAGAACAGCTCACTCGTATGGATACTGACTTGTTCATAAAGGTGGTCCCTTTCCAATGTCTGGGCTGTGTGTGGTCTCAACGAGACAAGAAGGAGAACCTCTCACCCACTATTTGGGCCACCATCTCCCAGTTCAATGCAGTCACCAACTGGGTCATCACTTCTCTGCTTCGTCCCTCGTCTATTGCTTCATCCTCCCCAACCACACAAAGAGCGAGAGTCATAGAAAAATGGGTGCGGGTTGCACAGGGGTGCAGAGAGCTGAAGAACTTCTCCTCTCTTAAGGCCATTTTATCTGCCCTTCAGTCTAACCCCATCTACAGACTAAGGAAGACCTGGGCAGCTGTGAGCAGAGAGGCCGTGTCTGTCTTTGAGAACCTGTGCAAAACGTTCCCAGATGAGAACTGTGTTCTGACTAGCCGAGAAATCTTTGTTGATAGCTCAGCTGGAGGAACAGTTCCATACCTGGGCACATACCTTACAGTACTGACCATGCTGGACACTGCCCTACCAGACACCGTGGAGGGTGGTCTCATAAATTTTGAAAAGAGGAGACGGGAGTATGAGATTTTAAGGCAGATCCGTCAGCTGCAGGCCTCGTGTTCTCAGTATGTTTTACCCCGTCATCCTCAGATCGCTGCCTGGCTACAGAGTCAGAAACTGCTGTCAGATCAAGAGAGCTATGAACTTTCCAGACAGCTGGAGACTCCTCATGATACTTCTCCATCCAACAGCGGCTGGAGTCACCGAACTCTCACTAAAAAGCTTTCATCGCTCTTGTCAGGAAATGAGGGCTCCAGAAAGAACGCAGATCAGATCAGCGTGTCCTCGTCAGGATCCAGCAGCTCTGAAATTGAGGAATCAGTGTCTTTTATACCACCGTCTCTTTCTAGTTGTGGTCAGAACACGTCCGAGGCTTTTCCCTCATCTTCCTCTCCTGATTCTTCCACCATGTCTAGTTCATCCTCCAGCTCTCAGCAGGATCTCAATCTTAATCCATCTTCCTCCTCCTCATCTTCAGCATCAGCTGACCCTCACCTGGTCTCCTGCCATAAGCGCTCGGTCTCCATGACCTCCCTGCCCTTCTACAACAGACAAGTGGATGACTCCTGCATCATCAGGGTCAGCGTGGAGTTCTGCAACAATGGCAACATGTACAAGAGCATACTGGGAATCATGGCCAGTGTTTTGTTTTATGCAGTGCTCTGCTGGGGATGTAGTATCACTGTTGATGATAAAAATAGGATTAATAAATTGATTAGAAAGTCTGGATCGGTTATTGGCCTTAATCCTGATTCACTTGAGTTGACCAGTCAGGATAAGACGGCCCAGGTGATCCAGAGAGCTCTGCAAAAACATAACCTGGAAGATGTTAGTGAGCAGGATTTCACCCTTGTACAAGTCCTGGCCCAAGGCAGAGAGTTGCATATTCCAGAAAAGGCCAACGTATTTTACGCCATGTCTTCATCAGCCAACTATGACTTTGTTCTACGCCGATGCCCAAAAGGCCAACGGAAGCAACTCATACGCTCAGTTTCACTGTCATCAGGACGAGCAACGAAATAACAGAGGATTCAGCCTTGATTTCTGGAGGATTCATATTTCCTGCGCAATCAGTTGCTGAAAACCGTCAAGACACAAGTCATTCAGACACAAATGGAAATGTGTGAGATTGAAAACAAGTCATTTAAAGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU377413 lncRNA upstream 13962 2392317 ~ 2404988 (+) True G331982
TU377410 lncRNA upstream 46947 2371802 ~ 2372003 (+) True G331979
TU377409 lncRNA upstream 48373 2370374 ~ 2370577 (+) True G331978
TU377408 lncRNA upstream 48939 2369772 ~ 2370011 (+) True G331977
TU377407 lncRNA upstream 49768 2368884 ~ 2369182 (+) True G331976
TU377453 lncRNA downstream 24733 2459189 ~ 2459471 (+) True G332017
TU377477 lncRNA downstream 83385 2517841 ~ 2518152 (+) True G332037
TU377445 lncRNA downstream 103289 2537745 ~ 2538362 (+) True G332009
TU377479 lncRNA downstream 105971 2540427 ~ 2540655 (+) True G332039
TU377483 lncRNA downstream 121317 2555773 ~ 2557247 (+) True G332042
CI01000113_02387553_02403367.mRNA mRNA upstream 15583 2387553 ~ 2403367 (+) True CI01000113_02387553_02403367
CI01000113_02342987_02345449.mRNA mRNA upstream 72944 2342987 ~ 2346006 (+) False CI01000113_02342987_02345449
CI01000113_02321704_02328603.mRNA mRNA upstream 90087 2321704 ~ 2328863 (+) True CI01000113_02321704_02328603
CI01000113_02300492_02320320.mRNA mRNA upstream 98380 2297820 ~ 2320570 (+) True CI01000113_02300492_02320320
CI01000113_02293534_02295639.mRNA mRNA upstream 123262 2292344 ~ 2295688 (+) True CI01000113_02293534_02295639
CI01000113_02548934_02576888.mRNA mRNA downstream 114478 2548934 ~ 2577790 (+) False CI01000113_02548934_02576888
CI01000113_02623348_02657507.mRNA mRNA downstream 188681 2623137 ~ 2657507 (+) True CI01000113_02623348_02657507
CI01000113_02685260_02707606.mRNA mRNA downstream 250804 2685260 ~ 2708849 (+) True CI01000113_02685260_02707606
TU377377 other upstream 67080 2351665 ~ 2351870 (+) True G331958
TU377135 other upstream 590047 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 636649 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 725080 1668002 ~ 1668035 (+) True G331759
TU377162 other upstream 755695 1662785 ~ 1663255 (+) True G331767
TU377442 other downstream 134311 2568767 ~ 2587700 (+) True G332006

Expression Profile