RNA id: CI01000113_02542996_02548587.mRNA


Basic Information

Item Value
RNA id CI01000113_02542996_02548587.mRNA
length 687
RNA type mRNA
GC content 0.45
exon number 6
gene id CI01000113_02542996_02548587
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2542996 ~ 2548587 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAGCGCTAGATGTCACCAGTATTCTCCATCAATGGAAGCGAAGAAGTCCTCTTACGTCACATCCGCTGTATCCTCAAACAGACCTCAGATCAGCTCGTGTCAGTTGGATCGCCGTCTTCCTCCGTTCTTTTCGTTGTTTTTAATATTAACAGCTGATTCGGGATCAACACTGTCACAGACCAACACACTGTTTAGGACGTGTAGGACAGCGCCATGTGTGTCCCTTCTGAACATACGGACACTGTCCACTCTACCTCCACCTCCCTCATCTAACAGAGACAAATCCAACAACCGGAAGACTGGTCCAGTTACATGGAAATCTCTTGCTATCACATTTGCACTGGGAGGAGGTCTTCTTCTAGGGATGAAATACTTCAAGAGAGAAAAAGAGGAAAAGATTGAAAAGGAAAGAACAAAGTCGATGGGAAAACCAGCTCTTGGAGGTCCATTCTCACTTGTCGACCACAACAATAAACCCACAAAGAGTGAAGATTTCCTCGGCCAGTGGCTGCTGATATATTTCGGTTTCACACACTGTCCAGACATCTGTCCGGATGAACTGGAGAAAATGATTGAGGTCGTAGATGAGATTGATAGAATAAAAACCCTTCCAGACATAACACCAATTCTCATCACCATTGACCCTGATAGAGACACACCAGAAGCAATGGCAGCATATGTCAAAG

Function

GO: NA

KEGG:

id description
K07152 SCO1; protein SCO1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378490 lncRNA downstream 45291 2497438 ~ 2497705 (-) True G332925
TU378484 lncRNA downstream 79433 2463319 ~ 2463563 (-) True G332919
TU378482 lncRNA downstream 83408 2459201 ~ 2459588 (-) True G332917
TU378480 lncRNA downstream 83469 2459201 ~ 2459527 (-) False G332917
TU378460 lncRNA downstream 87846 2428858 ~ 2455150 (-) True G332898
TU378417 lncRNA upstream 2941 2551528 ~ 2564174 (-) True G332863
TU378534 lncRNA upstream 18853 2567440 ~ 2567846 (-) True G332960
TU378535 lncRNA upstream 19285 2567872 ~ 2568105 (-) True G332961
TU378536 lncRNA upstream 20066 2568653 ~ 2577002 (-) False G332962
TU378540 lncRNA upstream 27709 2576296 ~ 2577002 (-) False G332962
CI01000113_02491883_02493061.mRNA mRNA downstream 49421 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
CI01000113_02479865_02481505.mRNA mRNA downstream 59470 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02356565_02370009.mRNA mRNA downstream 172987 2356565 ~ 2370009 (-) False CI01000113_02356565_02370009
CI01000113_02348726_02354574.mRNA mRNA downstream 188422 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
CI01000113_02334123_02335356.mRNA mRNA downstream 207640 2333511 ~ 2335356 (-) True CI01000113_02334123_02335356
CI01000113_02585185_02588728.mRNA mRNA upstream 36105 2584692 ~ 2588797 (-) True CI01000113_02585185_02588728
CI01000113_02604593_02611740.mRNA mRNA upstream 55946 2604533 ~ 2611990 (-) True CI01000113_02604593_02611740
CI01000113_02614236_02620012.mRNA mRNA upstream 65639 2614226 ~ 2620012 (-) True CI01000113_02614236_02620012
CI01000113_02719034_02729100.mRNA mRNA upstream 170155 2718742 ~ 2729100 (-) True CI01000113_02719034_02729100
CI01000113_02791507_02858943.mRNA mRNA upstream 241971 2790558 ~ 2859353 (-) True CI01000113_02791507_02858943
TU378401 other downstream 174665 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009
TU378382 other downstream 291783 2250845 ~ 2251213 (-) True G332837
TU378176 other downstream 394438 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 2096159 390227 ~ 446837 (-) True G332160
TU377673 other downstream 2493802 47990 ~ 49194 (-) False G332210

Expression Profile