RNA id: CI01000113_02548934_02576888.mRNA


Basic Information

Item Value
RNA id CI01000113_02548934_02576888.mRNA
length 3123
RNA type mRNA
GC content 0.46
exon number 20
gene id CI01000113_02548934_02576888
representative False

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2548934 ~ 2577790 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTCACTGTCGCTCGCGTTTTAATTTTGACGTCATATTCGTGCGACATTTGCATGAACACATGCACCATGCGTGTAAAATCTTGAGTTATGCAGTCTCCAGCAAAATAGAGCCGTTCTATAAGGGAGGCAAAGTACAGATAAGTCGTGATGAACAGTACATCTTCTGCACATGTGGATCAAGAGTCAACATTTTGCAGATCGATACAGGGAAAGTCATCCATAGTATTGAGCAGGATGATCAAGAGGACATCACCTCATTCTCTCTCAGTCCTGATGATGAGATGCTGGTGACCGCCAGCAGGGCTTTGCTCTTGAAGCAGTGGGACTGGAAGCAGGAGAAGTGCACCCGGTCGTGGAGGGCCATCCACAATGTGCCTGTGGCCAGCATGACCTTTGACTGCACCACCACCCTGCTGGCGACAGGAGGTTGTGATGGCACCATCAAGCTGTGGGATGTTGTGAAGCAGTACTGCACACACAATCTGAAAGGATCATCTGGTGTTGTACATTTGGTTGAGTTTCATCCAGACATCAGCAGGCTGCAGCTCTTCTCTTCCTCTGTCGACTGTGGGATCCGTATCTGGGATCTGCGAACCAGCAAGTGCGTCTGCATTTTGGAGAGCCACTACAGTGCCGTCACATCGCTGGCCTTCTCTCCTGATGGCCAAACACTCGTCAGTTCTGGCCGAGACAAAATCTGTTCAGTGTGGGACCTGAAGGAGAAGGCGGTGAAGAGGACAGTCCCTGTCTATGAGGCTGTGGAAGGTGTTGTTCTTTTGCCGGGGACGGGCGATTACTCTCAGATGGGTGTGAAGAGTGACAGTTTACACTTTGTCACGGCTGGCAGTAAAGGTGTTCTTCGAGTGTGGGACTCCAGCTCAGCGCGCTGTGTGTTCACGCAGACGCTGCCTGACGCTCCAGCTCTCAGCACAGAGGAGGCCGATCTGGACCCGCGCAGTCTGATGCACCTTCTGCCCATGCCTCAGTCCAACAGACTGGCCACAGTCACCGCAGAGCACAACATCCTCATCTATCAGATGCCCTCGCTCACCATACAGCAGCAGTTTGTGGGCTACAATGATGATATCTTGGATGTGAAGTTCCTGGGGAAGGACGACACGCACATCGTTGTGGCCACTAACAGCTCTCAGCTGAAGGTGTTTGAGTTGGCCACTAACAGCTGTCAGATTCTGTATGGACACACAGATACAATCCTATCTATTGAGGTGTTCTGCAAAGGCTCCATGTTTGCCAGCTGTGCAAAGGACAAGTCCTTGCGGCTGTGGAAGATGGATCCGACGAGCGGCCTTGTGCACTGCGTGGCTCAGGGCAGCGGACACTCCAATGCCGTGGGCTCTATCGCCTGCTCCAGGTTAAAGAAAGTCTTCCTGGTGTCAGGCAGTCAGGACTGCACTATCAAGGTGTGGGAAGTGCCTGACCCTCTTCCCGCCCTGGGATGTGAACCTGGCTTGATGACGGCACGACTCACAGAGAAAGCTCACGACAAGGTTGGTCTTTGCCCTTGTCACGTTCACTCTCACACAGGAGATGTGTTCACCGAAACTGTCAGTGGTTCTGATGGACTTGTGAAGTTGTGGACAATAAAAACGAACGAGTGTGTGAAAACATTTGATGCTCACCAGGACAAAGTGTGGGCTCTGCATGGCAGCAGCAAAGACGACCTGATGGTGACGGGATCAGCCGATTCCACCATCACGCTGTGGAAGGATGTGACAAAAGTGGAGTTGGCGGAAGAGCAGGCCAAACAAGAAAACCAAGTCCTTAAGCAGCAGGAACTGTCAAATTTACTTCATGAGAAGAAATACCTGAAGGCTCTGGGTATCGCTATCTCTCTGGATCAACCGCACACTGCCTTACGAGTCATCAGAGAAATTCGGCAGCAGGAGCATGGACTACAGGAGCTAGAAAAGACCCTCCTGAAACTCCGTCAGGATCAAAAAGAGTCGGTGCTGCGCTACTGTGTGGTGTGGAACACTAACTCGCGCAGCTGTCTGGACGCTCAGGCCGTCCTGCAGGTGCTGCTCACTCACCTGAGCCCAGAGGAGATGCTGCAGTATCAGGGGGCTCGGACTCATCTCGAGGGCCTCATCCCGTACACAGAGAGACACATGCAGAGAATCGGCCGTCTCCTGCAGGCCTCAATGTTTCTGGATTACATGTGGCAGAAAATGCGTATTACAGGTGGTAAAGAGAGGTAAAAACAAGTTCTCCAAACTTCCTGGTTGTGTATTCATTAACTAGTCAGCGGTATTTGCTAAGGAAAGAATCATTATTTTTGCGCATACCCAGGGTTAAATGGGTCATGAATTGAGAAATCAAATTTTCCTTTGATCTTTTGACATACATTTGAGCTTGAAAGTTTACATACCCCTTGCAGAATCTGCAAAAATGTTAATCGTTTTAACAAAATAAGAAGGATCATAGTTTTTTATACAATTACATTTTTATGATCCTCCTTATTTTGTTAAAACGATTAACATTTTTGCAGATTCTGCAAGGGGTATGTAAACTTTCAAGCTCAAATGTATGTCAAAAGATCAAAGGAAAATTTGATTTCTCAATTCATGACCCATTTAACCCTGGGTATGCGCAAAAATAATGATTTGTTCTGTAAGTTTTGGAACTCAAAACTTCCTCATTAGTCCAAAAACTGCTTTTATTGAAGCCAAGCTCCAAAAACTCGTCTCATTTCAGATTTTGTCACGTTATTACATCTGCAGAAGAAAATCAACGCCTTAGAAAATAGCTTATTACTTATACGTTTTTTTTTTTTATGTAAAAATATGGATAACATTATAAGTGGACCTCACAGAACATTTATAATTAGTTTTTAATGCAGTTTATGACCACTTCAATGGATTTGAACAAACCCTTAAATATTAGTATTAAACTTTGGTGCAAAACTAGTCTTGTATGTTGGTGTCATGGGTATGAATTACCAAAATGATCTTGTTAAATAGAACTGTTCTATTACTTTTTCTTTTCTAAGTAAAAGTAAAAGATTTGCTTTTTTTTTATTATTTAAAAAAAATAATTTTATTCAGGTAGCAAGTTTTTTTCAAAATAGACATCAACATAGAAAAGTGTCACATACAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377479 lncRNA upstream 8279 2540427 ~ 2540655 (+) True G332039
TU377445 lncRNA upstream 10572 2537745 ~ 2538362 (+) True G332009
TU377477 lncRNA upstream 30782 2517841 ~ 2518152 (+) True G332037
TU377453 lncRNA upstream 89463 2459189 ~ 2459471 (+) True G332017
TU377412 lncRNA upstream 92427 2379240 ~ 2456507 (+) True G331981
TU377447 lncRNA downstream 24548 2602338 ~ 2604908 (+) True G332011
TU377495 lncRNA downstream 125144 2702934 ~ 2703362 (+) True G332054
TU377498 lncRNA downstream 133886 2711676 ~ 2711928 (+) True G332057
TU377499 lncRNA downstream 134367 2712157 ~ 2712373 (+) True G332058
TU377540 lncRNA downstream 207630 2785420 ~ 2785663 (+) True G332098
CI01000113_02418950_02434326.mRNA mRNA upstream 114478 2418950 ~ 2434456 (+) True CI01000113_02418950_02434326
CI01000113_02387553_02403367.mRNA mRNA upstream 145567 2387553 ~ 2403367 (+) True CI01000113_02387553_02403367
CI01000113_02342987_02345449.mRNA mRNA upstream 202928 2342987 ~ 2346006 (+) False CI01000113_02342987_02345449
CI01000113_02321704_02328603.mRNA mRNA upstream 220071 2321704 ~ 2328863 (+) True CI01000113_02321704_02328603
CI01000113_02300492_02320320.mRNA mRNA upstream 228364 2297820 ~ 2320570 (+) True CI01000113_02300492_02320320
CI01000113_02623348_02657507.mRNA mRNA downstream 45347 2623137 ~ 2657507 (+) True CI01000113_02623348_02657507
CI01000113_02685260_02707606.mRNA mRNA downstream 107470 2685260 ~ 2708849 (+) True CI01000113_02685260_02707606
TU377377 other upstream 197064 2351665 ~ 2351870 (+) True G331958
TU377135 other upstream 720031 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 766633 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 855064 1668002 ~ 1668035 (+) True G331759
TU377162 other upstream 885679 1662785 ~ 1663255 (+) True G331767

Expression Profile