Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU377442 |
| length | 246 |
| RNA type | TUCP |
| GC content | 0.50 |
| exon number | 2 |
| gene id | G332006 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 2568767 ~ 2587700 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU377483 | lncRNA | upstream | 11520 | 2555773 ~ 2557247 (+) | True | G332042 |
| TU377479 | lncRNA | upstream | 28112 | 2540427 ~ 2540655 (+) | True | G332039 |
| TU377445 | lncRNA | upstream | 30405 | 2537745 ~ 2538362 (+) | True | G332009 |
| TU377477 | lncRNA | upstream | 50615 | 2517841 ~ 2518152 (+) | True | G332037 |
| TU377453 | lncRNA | upstream | 109296 | 2459189 ~ 2459471 (+) | True | G332017 |
| TU377447 | lncRNA | downstream | 14638 | 2602338 ~ 2604908 (+) | True | G332011 |
| TU377495 | lncRNA | downstream | 115234 | 2702934 ~ 2703362 (+) | True | G332054 |
| TU377498 | lncRNA | downstream | 123976 | 2711676 ~ 2711928 (+) | True | G332057 |
| TU377499 | lncRNA | downstream | 124457 | 2712157 ~ 2712373 (+) | True | G332058 |
| TU377540 | lncRNA | downstream | 197720 | 2785420 ~ 2785663 (+) | True | G332098 |
| CI01000113_02418950_02434326.mRNA | mRNA | upstream | 134311 | 2418950 ~ 2434456 (+) | True | CI01000113_02418950_02434326 |
| CI01000113_02387553_02403367.mRNA | mRNA | upstream | 165400 | 2387553 ~ 2403367 (+) | True | CI01000113_02387553_02403367 |
| CI01000113_02342987_02345449.mRNA | mRNA | upstream | 222761 | 2342987 ~ 2346006 (+) | False | CI01000113_02342987_02345449 |
| CI01000113_02321704_02328603.mRNA | mRNA | upstream | 239904 | 2321704 ~ 2328863 (+) | True | CI01000113_02321704_02328603 |
| CI01000113_02300492_02320320.mRNA | mRNA | upstream | 248197 | 2297820 ~ 2320570 (+) | True | CI01000113_02300492_02320320 |
| CI01000113_02623348_02657507.mRNA | mRNA | downstream | 35437 | 2623137 ~ 2657507 (+) | True | CI01000113_02623348_02657507 |
| CI01000113_02685260_02707606.mRNA | mRNA | downstream | 97560 | 2685260 ~ 2708849 (+) | True | CI01000113_02685260_02707606 |
| TU377377 | other | upstream | 216897 | 2351665 ~ 2351870 (+) | True | G331958 |
| TU377135 | other | upstream | 739864 | 1828809 ~ 1828903 (+) | True | G331759 |
| TU377145 | other | upstream | 786466 | 1668002 ~ 1782301 (+) | True | G331759 |
| TU377129 | other | upstream | 874897 | 1668002 ~ 1668035 (+) | True | G331759 |
| TU377162 | other | upstream | 905512 | 1662785 ~ 1663255 (+) | True | G331767 |
