RNA id: TU377671


Basic Information

Item Value
RNA id TU377671
length 1496
RNA type TUCP
GC content 0.48
exon number 1
gene id G332210
representative False

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 47990 ~ 49485 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTACATGCGTGTCTTCCACACTTTTAATCCAGCTCATTAGCATTATTAGTAAACGCTTATGCCATCAGCTGCTCATAACTGGTTCGTGGTTACTTCGGGGGGTCATCTTCGAGGCATTTCTAACTCACGCTCTCTGAGAGATGCTGGAGCCGTTACGCATAACGCGCATCATCAAGGATGCCCACGCGTCCCGCCTCTCCACACAAATCACTATTAACCCTTCCAGCAGCATTATTATCAGTGTTGGGCGTCCATCACACAGAAATAGCTCGTTTGTTCACACGTAATTAGTCACTCGGCTTTCTTACCGCTTACTTCCAGCGCAGTTGCTTATGGACGCGCTGGTGGTTCCGTGGAACGACGATGGCCAGGACATGCGGGACTTCTTGAGCCCCGGCCGGTCACTCGTGTCCATGGCATTCGAGCGCTCTATCTGTCGGTGGTGATGTCGGTCGGTGTCAGAGTAACCGCGATGTTTGATTTTGATGGGGGTCCGTGGCTGTCTCCACAGATGCTGGGGAGGCTTGAGGGTCGCCTGTCCCTCCCGGGGAACCGGCAGCGAAAGAGACAGGCTCTTTTTAGAGCAAGGTGGCGGTTCCATCATAGTGCAAAATTAATAGGTGTACCGAACGCAATGTGTTAAGAGGAATAAAAACGATATGGCTATGTATTCTTGCACATTAAGAAATCAACCAGTCTACTGTCCGTAACTGACTAGTCTCCATGTCTAACACCGGAATGTATTGAAAGCAGGTCCAAAGGCAATAAAGATTCAGTGCTTTTGTGAGAACTAATCACAGTGTTCAGATAACAGGTGATGGCGCAATGTCGTCCTGTCTTCTTGTCATCTCCGCGATTATGTCGATGATAAATCCAAAAAGTTCCTGTATATCAGAAAGGCTCCACTTTAAAGGCGTCGTAGCATCCGCGCGGTCGCGGGTGAAGCTCTTTCCCTGAAGTTTCTCATAGCGCGACGGGTCACTTATGTTCAGTGCGGATTTATTGCTTTTATCAACCCTCCAGACTGGTTTCCTGCCGCGATTATTGCTGTTAAAGACGGCACATGTCTCTCCAAGCTCTGGCGTCTCCAACTGGAGCCATGAGAACTCTGCGATGAGGAGCAATGTTGTACATCTGGAACTAACGGCGACTAAAACTCAAGCTCGCTGTCGGGAGATTCACCTTCCACCTCCATTAAAACCTCGCTGCGAACAGTTTCATTACGCGAATCATGTTGAATTTTGCCTGGAGAACAGCGCGCGTGGGATGATGGATGTATGTGAGATCCATGCACGCGGCTTTTTCGCGTCCCCGCTTTCTTCTTTCTTGAAGCATTCGTTCAATTCTGCGAAATCATGATTGTAAATCAAAGTTCACCGTTCTTCGTGCCGTACTTTAGTTAGTTTTGCCGTCTTATCTCGCTCGTATCAATCAGTTGTCGACAGATGTTAAATTATGGCATTTGTGAAACACTCTACCGCTTCACACTCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377662 lncRNA downstream 15677 32067 ~ 32313 (-) True G332201
TU377661 lncRNA downstream 16325 31448 ~ 31665 (-) True G332200
TU377681 lncRNA upstream 3201 52686 ~ 52993 (-) True G332213
TU377683 lncRNA upstream 4321 53806 ~ 54184 (-) False G332214
TU377682 lncRNA upstream 4461 53946 ~ 54184 (-) True G332214
TU377684 lncRNA upstream 6331 55816 ~ 56115 (-) True G332215
TU377685 lncRNA upstream 9760 59245 ~ 59590 (-) True G332216
CI01000113_00077172_00080517.mRNA mRNA upstream 25738 75223 ~ 80517 (-) False CI01000113_00077172_00080517
CI01000113_00122344_00130639.mRNA mRNA upstream 72369 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00254945_00255661.mRNA mRNA upstream 205373 254858 ~ 255709 (-) True CI01000113_00254945_00255661
CI01000113_00268929_00271262.mRNA mRNA upstream 219363 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00283931_00284691.mRNA mRNA upstream 234377 283862 ~ 284723 (-) True CI01000113_00283931_00284691
TU377621 other upstream 340742 390227 ~ 446837 (-) True G332160
TU378176 other upstream 2097729 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 2201360 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2318131 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile