RNA id: TU377682


Basic Information

Item Value
RNA id TU377682
length 239
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G332214
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 53806 ~ 54184 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGGCCTATTCAAAACAAAGGCGTAGCTTGATGACGGCAAGTTTGAGCGCGGAATCTTGGGACATGTGGTCTTCACCTCAACGGCCGGTGGAAACAATCGGGATAGGACTCAGGAAGAAATCATGTTCATGGATGCGATTATTAACGTTACTGTAGTATGAAGCAGAGCAGGACCGAGTGTTGTGGGAGCTGAACGAGGCCGCTGGAGCGATTGCGCAACACACGCCTCACGAGCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377681 lncRNA downstream 953 52686 ~ 52993 (-) True G332213
TU377674 lncRNA downstream 4692 48866 ~ 49254 (-) True G332210
TU377662 lncRNA downstream 21633 32067 ~ 32313 (-) True G332201
TU377661 lncRNA downstream 22281 31448 ~ 31665 (-) True G332200
TU377684 lncRNA upstream 1632 55816 ~ 56115 (-) True G332215
TU377685 lncRNA upstream 5061 59245 ~ 59590 (-) True G332216
TU377686 lncRNA upstream 6142 60326 ~ 60757 (-) True G332217
TU377693 lncRNA upstream 17897 72081 ~ 72339 (-) True G332223
TU377695 lncRNA upstream 22935 77119 ~ 77349 (-) False CI01000113_00077172_00080517
CI01000113_00077172_00080517.mRNA mRNA upstream 21039 75223 ~ 80517 (-) False CI01000113_00077172_00080517
CI01000113_00122344_00130639.mRNA mRNA upstream 67670 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00254945_00255661.mRNA mRNA upstream 200674 254858 ~ 255709 (-) True CI01000113_00254945_00255661
CI01000113_00268929_00271262.mRNA mRNA upstream 214664 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00283931_00284691.mRNA mRNA upstream 229678 283862 ~ 284723 (-) True CI01000113_00283931_00284691
TU377671 other downstream 4461 47990 ~ 49485 (-) False G332210
TU377621 other upstream 336043 390227 ~ 446837 (-) True G332160
TU378176 other upstream 2093030 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 2196661 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2313432 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile