RNA id: TU377685


Basic Information

Item Value
RNA id TU377685
length 346
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G332216
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 59245 ~ 59590 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCGGATTGCCAGACAGAGAAGCGTGATTCGTCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGGTGGGGTGCTTTACACCACTGCATCCGACGCTTTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGCTGCTCGGCCATGGAAACCCATTCCATGAAGCTCTCTACGCACTGTTCTTGAGCTAATCTGAAGACCACACAAAGTTTGGAGGTCTGTAGCTATTGACTCTGCAGAAAGTTGGTGACTTCTGCACACTGTGCGCCTCAGCATGCGCTGACCCCGCTCTGTGATATTACATGGCGTACCACTTCGTGGCTGAGTTGCTGTTGTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377684 lncRNA downstream 3130 55816 ~ 56115 (-) True G332215
TU377683 lncRNA downstream 5061 53806 ~ 54184 (-) False G332214
TU377682 lncRNA downstream 5061 53946 ~ 54184 (-) True G332214
TU377681 lncRNA downstream 6252 52686 ~ 52993 (-) True G332213
TU377674 lncRNA downstream 9991 48866 ~ 49254 (-) True G332210
TU377686 lncRNA upstream 736 60326 ~ 60757 (-) True G332217
TU377693 lncRNA upstream 12491 72081 ~ 72339 (-) True G332223
TU377695 lncRNA upstream 17529 77119 ~ 77349 (-) False CI01000113_00077172_00080517
TU377696 lncRNA upstream 18198 77788 ~ 78029 (-) True CI01000113_00077172_00080517
TU377697 lncRNA upstream 18869 78459 ~ 78849 (-) True G332227
CI01000113_00077172_00080517.mRNA mRNA upstream 15633 75223 ~ 80517 (-) False CI01000113_00077172_00080517
CI01000113_00122344_00130639.mRNA mRNA upstream 62264 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00254945_00255661.mRNA mRNA upstream 195268 254858 ~ 255709 (-) True CI01000113_00254945_00255661
CI01000113_00268929_00271262.mRNA mRNA upstream 209258 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00283931_00284691.mRNA mRNA upstream 224272 283862 ~ 284723 (-) True CI01000113_00283931_00284691
TU377671 other downstream 9760 47990 ~ 49485 (-) False G332210
TU377621 other upstream 330637 390227 ~ 446837 (-) True G332160
TU378176 other upstream 2087624 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 2191255 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2308026 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile