RNA id: TU377697


Basic Information

Item Value
RNA id TU377697
length 391
lncRNA type intronic
GC content 0.40
exon number 1
gene id G332227
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 78459 ~ 78849 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATTTATAATAGCTCACATGTGTGCACCCTCAAGGCTTCACACAATGAGGATGTCTTACTAACGTCCAAGAGGCTGCCTGAACGTGACAGCACAATTAAAGTAATTTGATAAATGTTGTACTGTCCTCTATGTGGTCCAGGATAGTATGAGTGGAGGCATGACTCTTCCATTCACAGCTTTTCGGGGTGGCAGTTTTGAAATTAATTGAATATAAATCTGGGTCTATGAGTAATGGAGCGTGTAATGCTCTAAAAGAAGTAGCTTTGAGTCATAAGAACTAAAAGACGACTCGCAAAATAAACGCATACACTAAAACTACCCTCATTTTCCCTCCAAGATCATAATCGTAAGCGCCGCCCCCATGTAATCACAAATTCATCAATCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377696 lncRNA downstream 430 77788 ~ 78029 (-) True CI01000113_00077172_00080517
TU377695 lncRNA downstream 1110 77119 ~ 77349 (-) False CI01000113_00077172_00080517
TU377693 lncRNA downstream 6120 72081 ~ 72339 (-) True G332223
TU377686 lncRNA downstream 17702 60326 ~ 60757 (-) True G332217
TU377685 lncRNA downstream 18869 59245 ~ 59590 (-) True G332216
TU377699 lncRNA upstream 3051 81900 ~ 82116 (-) True G332229
TU377700 lncRNA upstream 4088 82937 ~ 83461 (-) True G332230
TU377701 lncRNA upstream 4693 83542 ~ 83843 (-) True G332231
TU377734 lncRNA upstream 130732 209581 ~ 210858 (-) True G332264
TU377753 lncRNA upstream 158201 237050 ~ 239053 (-) True G332283
CI01000113_00122344_00130639.mRNA mRNA upstream 43005 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00254945_00255661.mRNA mRNA upstream 176009 254858 ~ 255709 (-) True CI01000113_00254945_00255661
CI01000113_00268929_00271262.mRNA mRNA upstream 189999 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00283931_00284691.mRNA mRNA upstream 205013 283862 ~ 284723 (-) True CI01000113_00283931_00284691
CI01000113_00301490_00302258.mRNA mRNA upstream 222559 301408 ~ 302281 (-) True CI01000113_00301490_00302258
TU377671 other downstream 28974 47990 ~ 49485 (-) False G332210
TU377621 other upstream 311378 390227 ~ 446837 (-) True G332160
TU378176 other upstream 2068365 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 2171996 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2288767 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile