RNA id: TU377699



Basic Information


Item Value
RNA id TU377699
length 217
lncRNA type intronic
GC content 0.35
exon number 1
gene id G332229
representative True

Chromosome Information


Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 81900 ~ 82116 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAATGACTGAATTTTCATTTTTGGGTGAACTAACTCTTTAATGTCACTGACACAAAACAAAATTGCATTCCTGTAGCTCAAACAGTATGGTGCTAGCAATGCCAAGCTCATGGGTTTGATTCCCAGGGAATGAAAGAACTGATAAAAATATATACCTTAAATGCAATGTAAGTCGCTTTGGATAATGCATAAATGTAAGTTAGTTCTTTCATGTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU377697 lncRNA downstream 3051 78459 ~ 78849 (-) True G332227
TU377696 lncRNA downstream 3871 77788 ~ 78029 (-) True CI01000113_00077172_00080517
TU377695 lncRNA downstream 4551 77119 ~ 77349 (-) False CI01000113_00077172_00080517
TU377693 lncRNA downstream 9561 72081 ~ 72339 (-) True G332223
TU377686 lncRNA downstream 21143 60326 ~ 60757 (-) True G332217
TU377700 lncRNA upstream 821 82937 ~ 83461 (-) True G332230
TU377701 lncRNA upstream 1426 83542 ~ 83843 (-) True G332231
TU377734 lncRNA upstream 127465 209581 ~ 210858 (-) True G332264
TU377753 lncRNA upstream 154934 237050 ~ 239053 (-) True G332283
TU377634 lncRNA upstream 158274 240390 ~ 294222 (-) True G332173
CI01000113_00077172_00080517.mRNA mRNA downstream 1383 75223 ~ 80517 (-) False CI01000113_00077172_00080517
CI01000113_00122344_00130639.mRNA mRNA upstream 39738 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00254945_00255661.mRNA mRNA upstream 172742 254858 ~ 255709 (-) True CI01000113_00254945_00255661
CI01000113_00268929_00271262.mRNA mRNA upstream 186732 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00283931_00284691.mRNA mRNA upstream 201746 283862 ~ 284723 (-) True CI01000113_00283931_00284691
CI01000113_00301490_00302258.mRNA mRNA upstream 219292 301408 ~ 302281 (-) True CI01000113_00301490_00302258
TU377671 other downstream 32415 47990 ~ 49485 (-) False G332210
TU377621 other upstream 308111 390227 ~ 446837 (-) True G332160
TU378176 other upstream 2065098 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 2168729 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2285500 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile