RNA id: TU377634


Basic Information

Item Value
RNA id TU377634
length 585
lncRNA type read_through
GC content 0.35
exon number 2
gene id G332173
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 240390 ~ 294222 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCGTATTTACTGAGAATAGTAAAAACAGTGAAAGGACACTTGATCAAGATAAACATTTTTTAGTTGTTTACACAATTCTCTTATAAATGTAACCAGTTGCTGTGTGACTATGACTGGATGATTGTTAAATATTGCTGGGAAGTTAAAAGTAAATGCACTTATATAATTTGACTGTATATGGTGACACTTGTTTCATGTCAACAAACGGACAGCTAGATAAATGATATTGCTATTACACGCTAGTTGTTATTCTTATTTGAGAATCTCATCCATTTAAATGAGCTCTTTTCTGCTTACAGTGGAAACTGCTACAAAAGGAACAGAAAACAACAGATAAGGGCCGATGGTGTCAAGTGCTAATTTCCTTTTTAAGAGTGCACAATTTTTATATCTATAAAAGTTGTACATGCTAAATTGTAGGTACACATACTGTACACAAACACACAAAAACTCACACACACACACACACACACACAGACAGTGGAATGGACGAGAAACTTTTGCTGGAAGAGGAGACATCAAATTCATGGCATTTACTTCAGTTCAGAGGAGGGAGGAGAAGATCCCAGAATAGGAGACTTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377753 lncRNA downstream 1337 237050 ~ 239053 (-) True G332283
TU377734 lncRNA downstream 29532 209581 ~ 210858 (-) True G332264
TU377701 lncRNA downstream 156547 83542 ~ 83843 (-) True G332231
TU377700 lncRNA downstream 156929 82937 ~ 83461 (-) True G332230
TU377699 lncRNA downstream 158274 81900 ~ 82116 (-) True G332229
TU377783 lncRNA upstream 79795 374017 ~ 374294 (-) True G332312
TU377784 lncRNA upstream 80264 374486 ~ 374692 (-) True G332313
TU377826 lncRNA upstream 153728 447950 ~ 448335 (-) True G332344
TU377829 lncRNA upstream 157926 452148 ~ 452348 (-) True G332346
TU377830 lncRNA upstream 158533 452755 ~ 453096 (-) True G332347
CI01000113_00122344_00130639.mRNA mRNA downstream 109683 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00077172_00080517.mRNA mRNA downstream 159873 75223 ~ 80517 (-) False CI01000113_00077172_00080517
CI01000113_00301490_00302258.mRNA mRNA upstream 7186 301408 ~ 302281 (-) True CI01000113_00301490_00302258
CI01000113_00308045_00308457.mRNA mRNA upstream 13682 307904 ~ 308514 (-) True CI01000113_00308045_00308457
CI01000113_00324040_00324756.mRNA mRNA upstream 29729 323951 ~ 324804 (-) True CI01000113_00324040_00324756
CI01000113_00332256_00333023.mRNA mRNA upstream 37949 332171 ~ 333055 (-) True CI01000113_00332256_00333023
CI01000113_00355640_00360687.mRNA mRNA upstream 61054 355276 ~ 360820 (-) True CI01000113_00355640_00360687
TU377671 other downstream 190905 47990 ~ 49485 (-) False G332210
TU377621 other upstream 96005 390227 ~ 446837 (-) True G332160
TU378176 other upstream 1852992 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 1956623 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 2073394 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile