RNA id: TU377830


Basic Information

Item Value
RNA id TU377830
length 342
lncRNA type intronic
GC content 0.34
exon number 1
gene id G332347
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 452755 ~ 453096 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAACCCTGAGCTTCAGTTTGTCTGATGTCATTTTAAAACCTTAATGCTTAATACAGGCAATTCTGAAAGTGTCTCGGACTGTGTAGATTTGAAAAGACGTGGGATAAAAATGAATAGCAGTGTGTAAAAAATATGTAAATATTTAAATTAACATTCAGCCGCATGCTATGGTATGAATTAAGTCATACATACCTGGCTGGACTATATGGCAATGATAATACATTCTTCTTCAAATGAACAATTTTAAAGTAACCCTATTATGCTTTTTCGAACATTACATCATTTTACTGAAGACTGCTTCTCAAATCTCTGGGAGTTCAATGCAGGATTCGCAAAACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377829 lncRNA downstream 407 452148 ~ 452348 (-) True G332346
TU377826 lncRNA downstream 4420 447950 ~ 448335 (-) True G332344
TU377784 lncRNA downstream 78063 374486 ~ 374692 (-) True G332313
TU377783 lncRNA downstream 78461 374017 ~ 374294 (-) True G332312
TU377619 lncRNA downstream 118139 277363 ~ 334616 (-) True G332158
TU377832 lncRNA upstream 27817 480913 ~ 481182 (-) True G332349
TU377631 lncRNA upstream 120744 573840 ~ 580135 (-) True G332170
TU377839 lncRNA upstream 136917 590013 ~ 590327 (-) True G332356
TU377626 lncRNA upstream 192494 645590 ~ 648926 (-) True G332165
TU377879 lncRNA upstream 236654 689750 ~ 689988 (-) True G332384
CI01000113_00355640_00360687.mRNA mRNA downstream 91935 355276 ~ 360820 (-) True CI01000113_00355640_00360687
CI01000113_00332256_00333023.mRNA mRNA downstream 119700 332171 ~ 333055 (-) True CI01000113_00332256_00333023
CI01000113_00324040_00324756.mRNA mRNA downstream 127951 323951 ~ 324804 (-) True CI01000113_00324040_00324756
CI01000113_00308045_00308457.mRNA mRNA downstream 144241 307904 ~ 308514 (-) True CI01000113_00308045_00308457
CI01000113_00301490_00302258.mRNA mRNA downstream 150474 301408 ~ 302281 (-) True CI01000113_00301490_00302258
CI01000113_00461761_00471457.mRNA mRNA upstream 8665 461761 ~ 471457 (-) True CI01000113_00461761_00471457
CI01000113_00473025_00476254.mRNA mRNA upstream 19036 472132 ~ 478063 (-) True CI01000113_00473025_00476254
CI01000113_00489480_00490623.mRNA mRNA upstream 36384 489480 ~ 490736 (-) True CI01000113_00489480_00490623
CI01000113_00496299_00500634.mRNA mRNA upstream 42999 496095 ~ 501017 (-) True CI01000113_00496299_00500634
CI01000113_00503311_00504977.mRNA mRNA upstream 49573 502669 ~ 506043 (-) True CI01000113_00503311_00504977
TU377621 other downstream 5918 390227 ~ 446837 (-) True G332160
TU377671 other downstream 403270 47990 ~ 49485 (-) False G332210
TU378176 other upstream 1694118 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 1797749 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 1914520 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile