RNA id: TU377832


Basic Information

Item Value
RNA id TU377832
length 270
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G332349
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 480913 ~ 481182 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAATGTATGAATATGAATATTTGATTACTGTACTGTATTTTTCTATTACATTTACATTTGCATAATAAATCATCTGCTAGCTACAGCCATGGGAGGTCTCTGATTAAATACTGATGCCTAGTGGTCAAAAGCAATAGCAAATGTAATAGGTCATTATTATTATAGCTAGGTTGACTTGTATGTTTGGTGTGGAATGGGTGCGGTAGGGGCCCCAACCTCATATTCTTTCATAGGGCCCAAAATTGCTAGCAGCGCCCCTGCATTTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377830 lncRNA downstream 27817 452755 ~ 453096 (-) True G332347
TU377829 lncRNA downstream 28565 452148 ~ 452348 (-) True G332346
TU377826 lncRNA downstream 32578 447950 ~ 448335 (-) True G332344
TU377784 lncRNA downstream 106221 374486 ~ 374692 (-) True G332313
TU377783 lncRNA downstream 106619 374017 ~ 374294 (-) True G332312
TU377631 lncRNA upstream 92658 573840 ~ 580135 (-) True G332170
TU377839 lncRNA upstream 108831 590013 ~ 590327 (-) True G332356
TU377626 lncRNA upstream 164408 645590 ~ 648926 (-) True G332165
TU377879 lncRNA upstream 208568 689750 ~ 689988 (-) True G332384
TU377884 lncRNA upstream 224797 705979 ~ 706261 (-) True G332389
CI01000113_00473025_00476254.mRNA mRNA downstream 2850 472132 ~ 478063 (-) True CI01000113_00473025_00476254
CI01000113_00461761_00471457.mRNA mRNA downstream 9456 461761 ~ 471457 (-) True CI01000113_00461761_00471457
CI01000113_00449242_00453843.mRNA mRNA downstream 27070 448924 ~ 453843 (-) True CI01000113_00449242_00453843
CI01000113_00355640_00360687.mRNA mRNA downstream 120093 355276 ~ 360820 (-) True CI01000113_00355640_00360687
CI01000113_00332256_00333023.mRNA mRNA downstream 147858 332171 ~ 333055 (-) True CI01000113_00332256_00333023
CI01000113_00489480_00490623.mRNA mRNA upstream 8298 489480 ~ 490736 (-) True CI01000113_00489480_00490623
CI01000113_00496299_00500634.mRNA mRNA upstream 14913 496095 ~ 501017 (-) True CI01000113_00496299_00500634
CI01000113_00503311_00504977.mRNA mRNA upstream 21487 502669 ~ 506043 (-) True CI01000113_00503311_00504977
CI01000113_00511782_00515713.mRNA mRNA upstream 30241 511423 ~ 515713 (-) True CI01000113_00511782_00515713
CI01000113_00529415_00542504.mRNA mRNA upstream 48048 529230 ~ 543020 (-) True CI01000113_00529415_00542504
TU377621 other downstream 34076 390227 ~ 446837 (-) True G332160
TU377671 other downstream 431428 47990 ~ 49485 (-) False G332210
TU378176 other upstream 1666032 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 1769663 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 1886434 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile