Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU377631 |
| length | 1784 |
| lncRNA type | antisense_over |
| GC content | 0.49 |
| exon number | 15 |
| gene id | G332170 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 573840 ~ 580135 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU377832 | lncRNA | downstream | 92658 | 480913 ~ 481182 (-) | True | G332349 |
| TU377830 | lncRNA | downstream | 120744 | 452755 ~ 453096 (-) | True | G332347 |
| TU377829 | lncRNA | downstream | 121492 | 452148 ~ 452348 (-) | True | G332346 |
| TU377826 | lncRNA | downstream | 125505 | 447950 ~ 448335 (-) | True | G332344 |
| TU377784 | lncRNA | downstream | 199148 | 374486 ~ 374692 (-) | True | G332313 |
| TU377839 | lncRNA | upstream | 9878 | 590013 ~ 590327 (-) | True | G332356 |
| TU377626 | lncRNA | upstream | 65455 | 645590 ~ 648926 (-) | True | G332165 |
| TU377879 | lncRNA | upstream | 109615 | 689750 ~ 689988 (-) | True | G332384 |
| TU377884 | lncRNA | upstream | 125844 | 705979 ~ 706261 (-) | True | G332389 |
| TU377888 | lncRNA | upstream | 141522 | 721657 ~ 721856 (-) | True | G332393 |
| CI01000113_00529415_00542504.mRNA | mRNA | downstream | 30820 | 529230 ~ 543020 (-) | True | CI01000113_00529415_00542504 |
| CI01000113_00511782_00515713.mRNA | mRNA | downstream | 58127 | 511423 ~ 515713 (-) | True | CI01000113_00511782_00515713 |
| CI01000113_00503311_00504977.mRNA | mRNA | downstream | 67797 | 502669 ~ 506043 (-) | True | CI01000113_00503311_00504977 |
| CI01000113_00496299_00500634.mRNA | mRNA | downstream | 72823 | 496095 ~ 501017 (-) | True | CI01000113_00496299_00500634 |
| CI01000113_00489480_00490623.mRNA | mRNA | downstream | 83104 | 489480 ~ 490736 (-) | True | CI01000113_00489480_00490623 |
| CI01000113_00593453_00601556.mRNA | mRNA | upstream | 13247 | 593382 ~ 601556 (-) | True | CI01000113_00593453_00601556 |
| CI01000113_00611039_00611881.mRNA | mRNA | upstream | 30725 | 610860 ~ 611939 (-) | True | CI01000113_00611039_00611881 |
| CI01000113_00616541_00627359.mRNA | mRNA | upstream | 36226 | 616361 ~ 627359 (-) | True | CI01000113_00616541_00627359 |
| CI01000113_00770409_00789987.mRNA | mRNA | upstream | 189998 | 770133 ~ 790683 (-) | True | CI01000113_00770409_00789987 |
| CI01000113_00907179_00957938.mRNA | mRNA | upstream | 326806 | 906941 ~ 958094 (-) | True | CI01000113_00907179_00957938 |
| TU377621 | other | downstream | 127003 | 390227 ~ 446837 (-) | True | G332160 |
| TU377671 | other | downstream | 524355 | 47990 ~ 49485 (-) | False | G332210 |
| TU378176 | other | upstream | 1567079 | 2147214 ~ 2148558 (-) | True | G332649 |
| TU378382 | other | upstream | 1670710 | 2250845 ~ 2251213 (-) | True | G332837 |
| TU378401 | other | upstream | 1787481 | 2367616 ~ 2368331 (-) | True | CI01000113_02356565_02370009 |
