RNA id: TU377917


Basic Information

Item Value
RNA id TU377917
length 222
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G332415
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 754741 ~ 754962 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAAGAGTCATCAGCTGCGCTCGAGCCTCGAGAGATCTTATGTTATTGAAGTTTGACATCTAATACTAATAGTATTAATCTATTAACAATTAATAATTAACATAATAGAAACTAATAGTATTAGATGTCTATGCACCTGTGCTCTCAGAAAGAAGTATCTTTTAGAAAATGACTTATCGTGAGAGTTTTAGTGGCATAACATCGGTTAATGGAAACGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377916 lncRNA downstream 2842 751655 ~ 751899 (-) True G332414
TU377888 lncRNA downstream 32885 721657 ~ 721856 (-) True G332393
TU377884 lncRNA downstream 48480 705979 ~ 706261 (-) True G332389
TU377879 lncRNA downstream 64753 689750 ~ 689988 (-) True G332384
TU377626 lncRNA downstream 105815 645590 ~ 648926 (-) True G332165
TU377907 lncRNA upstream 83619 838581 ~ 846812 (-) True G332405
TU377930 lncRNA upstream 108372 863334 ~ 869739 (-) True G332427
TU377965 lncRNA upstream 222338 977300 ~ 977523 (-) True G332458
TU378043 lncRNA upstream 362849 1117811 ~ 1118547 (-) True G332524
TU378095 lncRNA upstream 484709 1239671 ~ 1239956 (-) True G332574
CI01000113_00616541_00627359.mRNA mRNA downstream 127382 616361 ~ 627359 (-) True CI01000113_00616541_00627359
CI01000113_00611039_00611881.mRNA mRNA downstream 142802 610860 ~ 611939 (-) True CI01000113_00611039_00611881
CI01000113_00593453_00601556.mRNA mRNA downstream 153185 593382 ~ 601556 (-) True CI01000113_00593453_00601556
CI01000113_00529415_00542504.mRNA mRNA downstream 211721 529230 ~ 543020 (-) True CI01000113_00529415_00542504
CI01000113_00511782_00515713.mRNA mRNA downstream 239028 511423 ~ 515713 (-) True CI01000113_00511782_00515713
CI01000113_00770409_00789987.mRNA mRNA upstream 15171 770133 ~ 790683 (-) True CI01000113_00770409_00789987
CI01000113_00907179_00957938.mRNA mRNA upstream 151979 906941 ~ 958094 (-) True CI01000113_00907179_00957938
CI01000113_01096667_01106622.mRNA mRNA upstream 341360 1096322 ~ 1106870 (-) True CI01000113_01096667_01106622
CI01000113_01137145_01178626.mRNA mRNA upstream 382035 1136997 ~ 1178626 (-) True CI01000113_01137145_01178626
CI01000113_01180049_01192316.mRNA mRNA upstream 424874 1179836 ~ 1192316 (-) True CI01000113_01180049_01192316
TU377621 other downstream 307904 390227 ~ 446837 (-) True G332160
TU377671 other downstream 705256 47990 ~ 49485 (-) False G332210
TU378176 other upstream 1392252 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 1495883 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 1612654 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile