Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU376780 |
| length | 1139 |
| RNA type | TUCP |
| GC content | 0.57 |
| exon number | 14 |
| gene id | G331470 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 913392 ~ 916537 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU376783 | lncRNA | upstream | 25524 | 887668 ~ 887868 (+) | True | G331473 |
| TU376764 | lncRNA | upstream | 43643 | 869338 ~ 869749 (+) | False | G331456 |
| TU376765 | lncRNA | upstream | 43643 | 869338 ~ 869749 (+) | True | G331456 |
| TU376720 | lncRNA | upstream | 137207 | 770294 ~ 776185 (+) | True | G331413 |
| TU376706 | lncRNA | upstream | 187702 | 725459 ~ 725690 (+) | True | G331406 |
| TU376801 | lncRNA | downstream | 9117 | 925654 ~ 928787 (+) | True | G331491 |
| TU376820 | lncRNA | downstream | 14553 | 931090 ~ 932374 (+) | True | G331506 |
| TU376817 | lncRNA | downstream | 23989 | 940526 ~ 942201 (+) | True | G331504 |
| TU376824 | lncRNA | downstream | 37454 | 953991 ~ 973533 (+) | True | G331510 |
| TU376851 | lncRNA | downstream | 60772 | 977309 ~ 977535 (+) | False | G331528 |
| CI01000113_00659612_00684227.mRNA | mRNA | upstream | 228362 | 659612 ~ 685030 (+) | True | CI01000113_00659612_00684227 |
| CI01000113_00645261_00649236.mRNA | mRNA | upstream | 263577 | 645261 ~ 649815 (+) | True | CI01000113_00645261_00649236 |
| CI01000113_00629848_00638123.mRNA | mRNA | upstream | 274960 | 628843 ~ 638432 (+) | True | CI01000113_00629848_00638123 |
| CI01000113_00574016_00587822.mRNA | mRNA | upstream | 325310 | 573455 ~ 588082 (+) | True | CI01000113_00574016_00587822 |
| CI01000113_00568754_00569821.mRNA | mRNA | upstream | 342876 | 568410 ~ 570516 (+) | True | CI01000113_00568754_00569821 |
| CI01000113_00997825_01005290.mRNA | mRNA | downstream | 80326 | 996863 ~ 1005399 (+) | True | CI01000113_00997825_01005290 |
| CI01000113_01072283_01091398.mRNA | mRNA | downstream | 155368 | 1071905 ~ 1091730 (+) | True | CI01000113_01072283_01091398 |
| CI01000113_01110162_01112498.mRNA | mRNA | downstream | 193625 | 1110162 ~ 1112502 (+) | True | CI01000113_01110162_01112498 |
| CI01000113_01120464_01124821.mRNA | mRNA | downstream | 203861 | 1120398 ~ 1125031 (+) | True | CI01000113_01120464_01124821 |
| CI01000113_01127641_01134250.mRNA | mRNA | downstream | 211104 | 1127641 ~ 1134481 (+) | True | CI01000113_01127641_01134250 |
| TU376556 | other | upstream | 578771 | 334158 ~ 334621 (+) | True | G331260 |
| TU376797 | other | downstream | 1198 | 917735 ~ 922133 (+) | True | G331487 |
| TU376961 | other | downstream | 329754 | 1246291 ~ 1246573 (+) | True | G331615 |
| TU376908 | other | downstream | 508024 | 1424561 ~ 1425441 (+) | True | G331578 |
| TU377162 | other | downstream | 746248 | 1662785 ~ 1663255 (+) | True | G331767 |
| TU377129 | other | downstream | 751465 | 1668002 ~ 1668035 (+) | True | G331759 |
