RNA id: TU376851


Basic Information

Item Value
RNA id TU376851
length 227
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G331528
representative False

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 977309 ~ 977746 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAATGGCTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376824 lncRNA upstream 3776 953991 ~ 973533 (+) True G331510
TU376817 lncRNA upstream 35108 940526 ~ 942201 (+) True G331504
TU376820 lncRNA upstream 44935 931090 ~ 932374 (+) True G331506
TU376801 lncRNA upstream 48522 925654 ~ 928787 (+) True G331491
TU376783 lncRNA upstream 89441 887668 ~ 887868 (+) True G331473
TU376855 lncRNA downstream 1789 979324 ~ 979718 (+) True G331529
TU376856 lncRNA downstream 8548 986083 ~ 986441 (+) True G331530
TU376808 lncRNA downstream 86413 1063948 ~ 1069971 (+) True G331496
TU376807 lncRNA downstream 140276 1117811 ~ 1118539 (+) True G331495
TU376990 lncRNA downstream 219249 1196784 ~ 1197024 (+) True G331644
CI01000113_00659612_00684227.mRNA mRNA upstream 292279 659612 ~ 685030 (+) True CI01000113_00659612_00684227
CI01000113_00645261_00649236.mRNA mRNA upstream 327494 645261 ~ 649815 (+) True CI01000113_00645261_00649236
CI01000113_00629848_00638123.mRNA mRNA upstream 338877 628843 ~ 638432 (+) True CI01000113_00629848_00638123
CI01000113_00574016_00587822.mRNA mRNA upstream 389227 573455 ~ 588082 (+) True CI01000113_00574016_00587822
CI01000113_00568754_00569821.mRNA mRNA upstream 406793 568410 ~ 570516 (+) True CI01000113_00568754_00569821
CI01000113_00997825_01005290.mRNA mRNA downstream 19328 996863 ~ 1005399 (+) True CI01000113_00997825_01005290
CI01000113_01072283_01091398.mRNA mRNA downstream 94370 1071905 ~ 1091730 (+) True CI01000113_01072283_01091398
CI01000113_01110162_01112498.mRNA mRNA downstream 132627 1110162 ~ 1112502 (+) True CI01000113_01110162_01112498
CI01000113_01120464_01124821.mRNA mRNA downstream 142863 1120398 ~ 1125031 (+) True CI01000113_01120464_01124821
CI01000113_01127641_01134250.mRNA mRNA downstream 150106 1127641 ~ 1134481 (+) True CI01000113_01127641_01134250
TU376797 other upstream 55176 917735 ~ 922133 (+) True G331487
TU376780 other upstream 60772 913392 ~ 916537 (+) True G331470
TU376556 other upstream 642688 334158 ~ 334621 (+) True G331260
TU376961 other downstream 268756 1246291 ~ 1246573 (+) True G331615
TU376908 other downstream 447026 1424561 ~ 1425441 (+) True G331578
TU377162 other downstream 685250 1662785 ~ 1663255 (+) True G331767
TU377129 other downstream 690467 1668002 ~ 1668035 (+) True G331759
TU377145 other downstream 690467 1668002 ~ 1782301 (+) True G331759

Expression Profile