RNA id: TU377092


Basic Information

Item Value
RNA id TU377092
length 295
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G331744
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1585698 ~ 1586364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTGCCAAAACGTCTTTGAAAATCTTTTTGAATAAAACGTTTAAAATAAATTTAAAAATGATGTTTGTTGAAAAATAATGTTTGTTTAGCATTTTAAATTCAAGTGATATCAACTGCTCACCATTTCGACAAGAGCCGTTGCTCTGTTACGGACAGTCACATGTCCAAAATGGACAGAGGAGGGAAGCGTTTCTGGGGCGCAGAACAGAAAACAGAAAACGCAAAAAAGAAAATGAAAATGAAAAACAGTGTCTTAAAATGAGGACATCGATGTCCATGTGGATAACAAGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377084 lncRNA upstream 17826 1567829 ~ 1568207 (+) True G331737
TU377082 lncRNA upstream 30563 1555211 ~ 1555470 (+) True G331735
TU377079 lncRNA upstream 41956 1543847 ~ 1544077 (+) True G331732
TU377056 lncRNA upstream 94961 1488561 ~ 1491072 (+) True G331709
TU376955 lncRNA upstream 186371 1393245 ~ 1399662 (+) True G331611
TU377096 lncRNA downstream 15049 1601376 ~ 1601608 (+) True G331746
TU377097 lncRNA downstream 22894 1609221 ~ 1609426 (+) True G331747
TU377110 lncRNA downstream 49824 1636151 ~ 1636660 (+) True G331755
TU377120 lncRNA downstream 51791 1638118 ~ 1638433 (+) True G331756
TU377187 lncRNA downstream 147347 1733674 ~ 1781690 (+) True G331790
CI01000113_01547153_01553082.mRNA mRNA upstream 32247 1546736 ~ 1553786 (+) True CI01000113_01547153_01553082
CI01000113_01530888_01533572.mRNA mRNA upstream 52461 1530791 ~ 1533572 (+) True CI01000113_01530888_01533572
CI01000113_01515238_01529826.mRNA mRNA upstream 56082 1515171 ~ 1529951 (+) True CI01000113_01515238_01529826
CI01000113_01510550_01513751.mRNA mRNA upstream 71827 1510550 ~ 1514206 (+) True CI01000113_01510550_01513751
CI01000113_01507537_01509522.mRNA mRNA upstream 76511 1507537 ~ 1509522 (+) True CI01000113_01507537_01509522
CI01000113_01666106_01684663.mRNA mRNA downstream 79739 1666066 ~ 1684701 (+) False CI01000113_01666106_01684663
CI01000113_01691097_01696776.mRNA mRNA downstream 104770 1691097 ~ 1696776 (+) False CI01000113_01691097_01696776
CI01000113_01698764_01709585.mRNA mRNA downstream 112297 1698624 ~ 1709708 (+) True CI01000113_01698764_01709585
CI01000113_01716646_01752755.mRNA mRNA downstream 129422 1715749 ~ 1753351 (+) True CI01000113_01716646_01752755
CI01000113_01761054_01815819.mRNA mRNA downstream 174600 1760927 ~ 1815997 (+) False CI01000113_01761054_01815819
TU376908 other upstream 160327 1424561 ~ 1425441 (+) True G331578
TU376961 other upstream 339460 1246291 ~ 1246573 (+) True G331615
TU376797 other upstream 663900 917735 ~ 922133 (+) True G331487
TU376780 other upstream 669496 913392 ~ 916537 (+) True G331470
TU376556 other upstream 1251412 334158 ~ 334621 (+) True G331260
TU377162 other downstream 76458 1662785 ~ 1663255 (+) True G331767
TU377129 other downstream 81675 1668002 ~ 1668035 (+) True G331759
TU377145 other downstream 81675 1668002 ~ 1782301 (+) True G331759
TU377135 other downstream 239830 1828809 ~ 1828903 (+) True G331759
TU377377 other downstream 757094 2351665 ~ 2351870 (+) True G331958

Expression Profile