RNA id: TU377246


Basic Information

Item Value
RNA id TU377246
length 307
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G331840
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1855831 ~ 1856934 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTAGTTGATTTCTTTTTCTCTGTCTCTTCTTTCTTTAGCTCGACCTCTGGCTGTCGCTCTACCTGGTTGTTTGTGAGGAAGAGGACATGCTCAGTCTCTTGGGTCATGCGGTGGATGTAAGCTTTCTCTGACTCCTGTCGCCCTCTGCGGAAGTGTGGGATAGGAATATCTCCTGAGACCATCTTTGGTTTAGAGGCTTTTTTTCCTTTTCTGGGAGCCTTGTTTCATCATCTCTTTACTCTTCATGATTTCACGCAAACGTTGAGGAATCTGCTGGAGGTGATCGTCTGATGCAGGATCAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377154 lncRNA upstream 51592 1803880 ~ 1804239 (+) True G331762
TU377187 lncRNA upstream 74141 1733674 ~ 1781690 (+) True G331790
TU377190 lncRNA upstream 98853 1755457 ~ 1756978 (+) True G331793
TU377120 lncRNA upstream 217398 1638118 ~ 1638433 (+) True G331756
TU377110 lncRNA upstream 219171 1636151 ~ 1636660 (+) True G331755
TU377224 lncRNA downstream 49485 1906419 ~ 1909070 (+) True G331820
TU377228 lncRNA downstream 141510 1998444 ~ 2057885 (+) True G331824
TU377237 lncRNA downstream 173904 2030838 ~ 2034228 (+) True G331833
TU377319 lncRNA downstream 214601 2071535 ~ 2072337 (+) True G331907
TU377326 lncRNA downstream 249345 2106279 ~ 2106617 (+) True G331914
CI01000113_01834891_01839297.mRNA mRNA upstream 15705 1834891 ~ 1840126 (+) True CI01000113_01834891_01839297
CI01000113_01826332_01833431.mRNA mRNA upstream 22302 1825854 ~ 1833529 (+) False CI01000113_01826332_01833431
CI01000113_01761054_01815819.mRNA mRNA upstream 39834 1760927 ~ 1815997 (+) False CI01000113_01761054_01815819
CI01000113_01716646_01752755.mRNA mRNA upstream 102480 1715749 ~ 1753351 (+) True CI01000113_01716646_01752755
CI01000113_01698764_01709585.mRNA mRNA upstream 146123 1698624 ~ 1709708 (+) True CI01000113_01698764_01709585
CI01000113_01983091_01989335.mRNA mRNA downstream 126157 1983091 ~ 1989335 (+) True CI01000113_01983091_01989335
CI01000113_01994682_02001599.mRNA mRNA downstream 137748 1994682 ~ 2002028 (+) True CI01000113_01994682_02001599
CI01000113_02042831_02055567.mRNA mRNA downstream 183064 2039998 ~ 2056124 (+) True CI01000113_02042831_02055567
CI01000113_02059842_02092732.mRNA mRNA downstream 202908 2059842 ~ 2093663 (+) True CI01000113_02059842_02092732
CI01000113_02111396_02122911.mRNA mRNA downstream 253701 2110635 ~ 2123037 (+) False CI01000113_02111396_02122911
TU377135 other upstream 26928 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 73530 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 161961 1668002 ~ 1668035 (+) True G331759
TU377162 other upstream 192576 1662785 ~ 1663255 (+) True G331767
TU376908 other upstream 430125 1424561 ~ 1425441 (+) True G331578
TU377377 other downstream 486487 2351665 ~ 2351870 (+) True G331958
TU377442 other downstream 711833 2568767 ~ 2587700 (+) True G332006

Expression Profile