RNA id: TU377222


Basic Information

Item Value
RNA id TU377222
length 315
lncRNA type intronic
GC content 0.37
exon number 1
gene id G331818
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2117935 ~ 2118249 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAACGTGACTGCAGTGCTTCAACCTTAATGTTATAAAGTGACGAGAATACTTTGTGTGCAAAAACAAAACAAAAATAACGACTTTATTCAACAATTTCCTCTCTTCCCTGTCATTCTCCTACGCTGTTTACGTTGTAGACACAGAGCAGCGCTCCTGGGTTCTACGTCAGAACTACTATTTACTACTGTTGGTATAGTATACTATTTACTTGGAGAAGAAATTGTTGAATAAAGTCATTATTTTTGTTAGAAAGTATTCTCGACACTTCATAACATTAAGGTCGAACCACTGCAGTCACGTCGACTATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377220 lncRNA upstream 784 2112683 ~ 2117151 (+) True G331816
TU377326 lncRNA upstream 11318 2106279 ~ 2106617 (+) True G331914
TU377319 lncRNA upstream 45598 2071535 ~ 2072337 (+) True G331907
TU377228 lncRNA upstream 60050 1998444 ~ 2057885 (+) True G331824
TU377237 lncRNA upstream 83707 2030838 ~ 2034228 (+) True G331833
TU377219 lncRNA downstream 121 2118370 ~ 2120959 (+) True CI01000113_02111396_02122911
TU377225 lncRNA downstream 14637 2136540 ~ 2136665 (+) True G331821
TU377235 lncRNA downstream 35468 2153717 ~ 2154117 (+) True G331831
TU377352 lncRNA downstream 128722 2246971 ~ 2247424 (+) True G331937
TU377355 lncRNA downstream 131685 2249934 ~ 2250354 (+) True G331939
CI01000113_02059842_02092732.mRNA mRNA upstream 24272 2059842 ~ 2093663 (+) True CI01000113_02059842_02092732
CI01000113_02042831_02055567.mRNA mRNA upstream 61811 2039998 ~ 2056124 (+) True CI01000113_02042831_02055567
CI01000113_01994682_02001599.mRNA mRNA upstream 115907 1994682 ~ 2002028 (+) True CI01000113_01994682_02001599
CI01000113_01983091_01989335.mRNA mRNA upstream 128600 1983091 ~ 1989335 (+) True CI01000113_01983091_01989335
CI01000113_01834891_01839297.mRNA mRNA upstream 277809 1834891 ~ 1840126 (+) True CI01000113_01834891_01839297
CI01000113_02133051_02135286.mRNA mRNA downstream 14590 2132839 ~ 2135498 (+) False CI01000113_02133051_02135286
CI01000113_02147391_02148242.mRNA mRNA downstream 29142 2147391 ~ 2148434 (+) True CI01000113_02147391_02148242
CI01000113_02156565_02157428.mRNA mRNA downstream 37978 2156227 ~ 2157464 (+) True CI01000113_02156565_02157428
CI01000113_02166259_02170108.mRNA mRNA downstream 48010 2166259 ~ 2170275 (+) True CI01000113_02166259_02170108
CI01000113_02183987_02191396.mRNA mRNA downstream 65311 2183560 ~ 2191503 (+) True CI01000113_02183987_02191396
TU377135 other upstream 289032 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 335634 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 424065 1668002 ~ 1668035 (+) True G331759
TU377162 other upstream 454680 1662785 ~ 1663255 (+) True G331767
TU376908 other upstream 692229 1424561 ~ 1425441 (+) True G331578
TU377377 other downstream 225172 2351665 ~ 2351870 (+) True G331958
TU377442 other downstream 450518 2568767 ~ 2587700 (+) True G332006

Expression Profile