RNA id: TU377355


Basic Information

Item Value
RNA id TU377355
length 421
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G331939
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2249934 ~ 2250354 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAAAATGTATCATTTTAAGGGAAAAATAAGTTGATTTTAAATTTCATGGCATCAACACATCTCAAAAAAGTTGGGACAAGGCCATGTTTACCACTGTGTGACATCCCCTCTTCTTTTTATAACAGTCTGCAAACGTCTGGGGACTGAGGAGACAAGTTGCTCAAGTTTAGGAATAGGAATGTTGTCCCATTCTTGTCTAATACAGGCTTCTAGTTGCTCAACTGTCTTAGGTCTTCTTTGTCGCATCTTCCTCTTTATGATGCGCCAAATGTTTTCTATGAGTGAAAGATCTGGACTGCAGGCTGGCCATTTCAGTACCCGGATCCTTCTTCTACGCAGCCATGATGTTGTAATTGATGCAGTATGTGGTCTGGCATTGTCATGTTGGAAAATGCAAGGTCTTCCCTGAAAGAGACGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377352 lncRNA upstream 2510 2246971 ~ 2247424 (+) True G331937
TU377235 lncRNA upstream 95817 2153717 ~ 2154117 (+) True G331831
TU377225 lncRNA upstream 113269 2136540 ~ 2136665 (+) True G331821
TU377219 lncRNA upstream 128975 2118370 ~ 2120959 (+) True CI01000113_02111396_02122911
TU377222 lncRNA upstream 131685 2117935 ~ 2118249 (+) True G331818
TU377394 lncRNA downstream 107835 2358189 ~ 2359966 (+) True G331971
TU377366 lncRNA downstream 113220 2363574 ~ 2365297 (+) True G331948
TU377407 lncRNA downstream 118530 2368884 ~ 2369182 (+) True G331976
TU377408 lncRNA downstream 119418 2369772 ~ 2370011 (+) True G331977
TU377409 lncRNA downstream 120020 2370374 ~ 2370577 (+) True G331978
CI01000113_02227694_02239947.mRNA mRNA upstream 9842 2227694 ~ 2240092 (+) True CI01000113_02227694_02239947
CI01000113_02216033_02222467.mRNA mRNA upstream 27467 2215947 ~ 2222467 (+) True CI01000113_02216033_02222467
CI01000113_02210912_02211861.mRNA mRNA upstream 37847 2210912 ~ 2212087 (+) True CI01000113_02210912_02211861
CI01000113_02203100_02206995.mRNA mRNA upstream 42851 2203100 ~ 2207083 (+) True CI01000113_02203100_02206995
CI01000113_02183987_02191396.mRNA mRNA upstream 58431 2183560 ~ 2191503 (+) True CI01000113_02183987_02191396
CI01000113_02293534_02295639.mRNA mRNA downstream 41990 2292344 ~ 2295688 (+) True CI01000113_02293534_02295639
CI01000113_02300492_02320320.mRNA mRNA downstream 47466 2297820 ~ 2320570 (+) True CI01000113_02300492_02320320
CI01000113_02321704_02328603.mRNA mRNA downstream 71350 2321704 ~ 2328863 (+) True CI01000113_02321704_02328603
CI01000113_02342987_02345449.mRNA mRNA downstream 92633 2342987 ~ 2346006 (+) False CI01000113_02342987_02345449
CI01000113_02387553_02403367.mRNA mRNA downstream 137199 2387553 ~ 2403367 (+) True CI01000113_02387553_02403367
TU377135 other upstream 421031 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 467633 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 556064 1668002 ~ 1668035 (+) True G331759
TU377162 other upstream 586679 1662785 ~ 1663255 (+) True G331767
TU376908 other upstream 824228 1424561 ~ 1425441 (+) True G331578
TU377377 other downstream 93067 2351665 ~ 2351870 (+) True G331958
TU377442 other downstream 318413 2568767 ~ 2587700 (+) True G332006

Expression Profile