RNA id: TU378431


Basic Information

Item Value
RNA id TU378431
length 224
lncRNA type read_through
GC content 0.37
exon number 2
gene id G332872
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2304266 ~ 2330958 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAATCCGATGGCTCAGTGAGGCCTCTATTGACAGCAAGATAATTAACACTTTCAATGCCCAGAAAGCTACTAAAAACGTATTTAAAACAGTTCATGTGACTACAGTGGTTCAACCTTAATGTTATGAAGTGATGAGAATACTTTTTGTGCGCCAAAAAAACAAAATAACGACTTTATTCAACAATATCTAGTGATGGGCGAACACTGCTTCATGAAGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378429 lncRNA downstream 5373 2298469 ~ 2298893 (-) True G332871
TU378420 lncRNA downstream 14244 2289648 ~ 2290022 (-) True G332866
TU378183 lncRNA downstream 145905 2156517 ~ 2158361 (-) True G332656
TU378366 lncRNA downstream 157766 2146202 ~ 2146500 (-) True G332821
TU378365 lncRNA downstream 158525 2144904 ~ 2145741 (-) True G332820
TU378453 lncRNA upstream 82751 2413709 ~ 2419211 (-) True G332894
TU378460 lncRNA upstream 97900 2428858 ~ 2455150 (-) True G332898
TU378480 lncRNA upstream 128243 2459201 ~ 2459527 (-) False G332917
TU378482 lncRNA upstream 128243 2459201 ~ 2459588 (-) True G332917
TU378484 lncRNA upstream 132361 2463319 ~ 2463563 (-) True G332919
CI01000113_02193825_02200601.mRNA mRNA downstream 102991 2193355 ~ 2201275 (-) True CI01000113_02193825_02200601
CI01000113_02170894_02179511.mRNA mRNA downstream 122847 2170761 ~ 2181419 (-) True CI01000113_02170894_02179511
CI01000113_02159290_02165087.mRNA mRNA downstream 139179 2158710 ~ 2165087 (-) True CI01000113_02159290_02165087
CI01000113_02136165_02143106.mRNA mRNA downstream 161160 2135324 ~ 2143106 (-) True CI01000113_02136165_02143106
CI01000113_02127709_02131244.mRNA mRNA downstream 173022 2127209 ~ 2131244 (-) True CI01000113_02127709_02131244
CI01000113_02334123_02335356.mRNA mRNA upstream 2553 2333511 ~ 2335356 (-) True CI01000113_02334123_02335356
CI01000113_02348726_02354574.mRNA mRNA upstream 17648 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
CI01000113_02356565_02370009.mRNA mRNA upstream 25607 2356565 ~ 2370009 (-) False CI01000113_02356565_02370009
CI01000113_02479865_02481505.mRNA mRNA upstream 147859 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02491883_02493061.mRNA mRNA upstream 159695 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
TU378382 other downstream 53053 2250845 ~ 2251213 (-) True G332837
TU378176 other downstream 155708 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 1857429 390227 ~ 446837 (-) True G332160
TU377672 other downstream 2255012 47990 ~ 49254 (-) False G332210
TU378401 other upstream 36658 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile