RNA id: TU377407


Basic Information

Item Value
RNA id TU377407
length 299
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G331976
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2368884 ~ 2369182 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGTTCAAGATCTTCAACCAGGGATGGCTCAGTGCTCAGAGAATCAAGGAGCGCTCTCATTGTATCCTTATTTTTAGTGGCTACCTGAATCTTTGAGTATGTGTCTTGGTTAATTATTCCAACTGACTTCAGTGCATCAAAAATTTGCATCATAGCATTAACCTTCTGAATGGGAACTTCACTGCGATCGTCCACAAATCGAGCATCTGAAAAACAAATGACAGTTAAACCAGAATATTTCCCATATGCAATGTGAGTAATACTGTAGAGTAGAAACATCCATTCAACGAGTGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377366 lncRNA upstream 3587 2363574 ~ 2365297 (+) True G331948
TU377394 lncRNA upstream 8918 2358189 ~ 2359966 (+) True G331971
TU377355 lncRNA upstream 118530 2249934 ~ 2250354 (+) True G331939
TU377352 lncRNA upstream 121460 2246971 ~ 2247424 (+) True G331937
TU377235 lncRNA upstream 214767 2153717 ~ 2154117 (+) True G331831
TU377408 lncRNA downstream 590 2369772 ~ 2370011 (+) True G331977
TU377409 lncRNA downstream 1192 2370374 ~ 2370577 (+) True G331978
TU377410 lncRNA downstream 2620 2371802 ~ 2372003 (+) True G331979
TU377412 lncRNA downstream 10058 2379240 ~ 2456507 (+) True G331981
TU377413 lncRNA downstream 23135 2392317 ~ 2404988 (+) True G331982
CI01000113_02342987_02345449.mRNA mRNA upstream 22878 2342987 ~ 2346006 (+) False CI01000113_02342987_02345449
CI01000113_02321704_02328603.mRNA mRNA upstream 40021 2321704 ~ 2328863 (+) True CI01000113_02321704_02328603
CI01000113_02300492_02320320.mRNA mRNA upstream 48314 2297820 ~ 2320570 (+) True CI01000113_02300492_02320320
CI01000113_02293534_02295639.mRNA mRNA upstream 73196 2292344 ~ 2295688 (+) True CI01000113_02293534_02295639
CI01000113_02227694_02239947.mRNA mRNA upstream 128792 2227694 ~ 2240092 (+) True CI01000113_02227694_02239947
CI01000113_02387553_02403367.mRNA mRNA downstream 18371 2387553 ~ 2403367 (+) True CI01000113_02387553_02403367
CI01000113_02418950_02434326.mRNA mRNA downstream 49768 2418950 ~ 2434456 (+) True CI01000113_02418950_02434326
CI01000113_02548934_02576888.mRNA mRNA downstream 179752 2548934 ~ 2577790 (+) False CI01000113_02548934_02576888
CI01000113_02623348_02657507.mRNA mRNA downstream 253955 2623137 ~ 2657507 (+) True CI01000113_02623348_02657507
CI01000113_02685260_02707606.mRNA mRNA downstream 316078 2685260 ~ 2708849 (+) True CI01000113_02685260_02707606
TU377377 other upstream 17014 2351665 ~ 2351870 (+) True G331958
TU377135 other upstream 539981 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 586583 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 675014 1668002 ~ 1668035 (+) True G331759
TU377162 other upstream 705629 1662785 ~ 1663255 (+) True G331767
TU377442 other downstream 199585 2568767 ~ 2587700 (+) True G332006

Expression Profile