RNA id: TU378460


Basic Information

Item Value
RNA id TU378460
length 342
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G332898
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2428858 ~ 2455150 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGGTCTCAAAAAAGTTGGCACGGGGGCAACAAATGGCTGAAAATGCAAGAAATTTTGAAAAGATTCAGCTGGGAGAACATCTAGCAACTAATTAAGTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCAGAAGTAAAGATGGGCAGAGCTGTGAAAGAGTGCGTAAAAAGATTGTGGAATACTTTAAAAACAATGTTCCTCAACATCAAATTGCAAAGGCTTTGCAAATCTCATCATCTACAGTGCATAACATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCGTAAGGGACAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378453 lncRNA downstream 9647 2413709 ~ 2419211 (-) True G332894
TU378431 lncRNA downstream 97900 2304266 ~ 2330958 (-) True G332872
TU378429 lncRNA downstream 129965 2298469 ~ 2298893 (-) True G332871
TU378420 lncRNA downstream 138836 2289648 ~ 2290022 (-) True G332866
TU378183 lncRNA downstream 270497 2156517 ~ 2158361 (-) True G332656
TU378480 lncRNA upstream 4051 2459201 ~ 2459527 (-) False G332917
TU378482 lncRNA upstream 4051 2459201 ~ 2459588 (-) True G332917
TU378484 lncRNA upstream 8169 2463319 ~ 2463563 (-) True G332919
TU378490 lncRNA upstream 42288 2497438 ~ 2497705 (-) True G332925
TU378417 lncRNA upstream 96378 2551528 ~ 2564174 (-) True G332863
CI01000113_02356565_02370009.mRNA mRNA downstream 58849 2356565 ~ 2370009 (-) False CI01000113_02356565_02370009
CI01000113_02348726_02354574.mRNA mRNA downstream 74284 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
CI01000113_02334123_02335356.mRNA mRNA downstream 93502 2333511 ~ 2335356 (-) True CI01000113_02334123_02335356
CI01000113_02193825_02200601.mRNA mRNA downstream 227583 2193355 ~ 2201275 (-) True CI01000113_02193825_02200601
CI01000113_02170894_02179511.mRNA mRNA downstream 247439 2170761 ~ 2181419 (-) True CI01000113_02170894_02179511
CI01000113_02479865_02481505.mRNA mRNA upstream 23667 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02491883_02493061.mRNA mRNA upstream 35503 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
CI01000113_02542996_02548587.mRNA mRNA upstream 87846 2542996 ~ 2548587 (-) True CI01000113_02542996_02548587
CI01000113_02585185_02588728.mRNA mRNA upstream 129542 2584692 ~ 2588797 (-) True CI01000113_02585185_02588728
CI01000113_02604593_02611740.mRNA mRNA upstream 149383 2604533 ~ 2611990 (-) True CI01000113_02604593_02611740
TU378401 other downstream 60527 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009
TU378382 other downstream 177645 2250845 ~ 2251213 (-) True G332837
TU378176 other downstream 280300 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 1982021 390227 ~ 446837 (-) True G332160
TU377673 other downstream 2379664 47990 ~ 49194 (-) False G332210

Expression Profile