RNA id: TU378482


Basic Information

Item Value
RNA id TU378482
length 388
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G332917
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2459201 ~ 2459588 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTTGACCTTGGACCTCAGAAAACACAGTGGACCAACACCAGCAGATGACATGGCACCCCAAACCATCACTGACTGTGGAAACTTACACTGGACCTCAAGCAACGCGGATTGTGTGCCTCTCCTCTCTTCCTCCAGACTCTGGGACCCTGATTTCCAAAGGAAATGCAAAATTTACTTTCATCAGAGAACATGACTTTGGACCACTCAGCAGCAGTCCAGTCCTTTTTGTCTTTAGCCCAGGCGAGACGCTTCTGACGTTGTCTGTTGTTCAAGAGTGGCTTGACACAAGGAATGCGACAGCTGAAACCCATGTCTTGCATACGTCTGTGCGTAGTGGTTCTTGAAGCACTGACTCCAGCTGCAGTCCACTCTTTGTGAATCTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378460 lncRNA downstream 4051 2428858 ~ 2455150 (-) True G332898
TU378453 lncRNA downstream 39990 2413709 ~ 2419211 (-) True G332894
TU378431 lncRNA downstream 128243 2304266 ~ 2330958 (-) True G332872
TU378429 lncRNA downstream 160308 2298469 ~ 2298893 (-) True G332871
TU378420 lncRNA downstream 169179 2289648 ~ 2290022 (-) True G332866
TU378484 lncRNA upstream 3731 2463319 ~ 2463563 (-) True G332919
TU378490 lncRNA upstream 37850 2497438 ~ 2497705 (-) True G332925
TU378417 lncRNA upstream 91940 2551528 ~ 2564174 (-) True G332863
TU378534 lncRNA upstream 107852 2567440 ~ 2567846 (-) True G332960
TU378535 lncRNA upstream 108284 2567872 ~ 2568105 (-) True G332961
CI01000113_02356565_02370009.mRNA mRNA downstream 89192 2356565 ~ 2370009 (-) False CI01000113_02356565_02370009
CI01000113_02348726_02354574.mRNA mRNA downstream 104627 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
CI01000113_02334123_02335356.mRNA mRNA downstream 123845 2333511 ~ 2335356 (-) True CI01000113_02334123_02335356
CI01000113_02193825_02200601.mRNA mRNA downstream 257926 2193355 ~ 2201275 (-) True CI01000113_02193825_02200601
CI01000113_02170894_02179511.mRNA mRNA downstream 277782 2170761 ~ 2181419 (-) True CI01000113_02170894_02179511
CI01000113_02479865_02481505.mRNA mRNA upstream 19229 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02491883_02493061.mRNA mRNA upstream 31065 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
CI01000113_02542996_02548587.mRNA mRNA upstream 83408 2542996 ~ 2548587 (-) True CI01000113_02542996_02548587
CI01000113_02585185_02588728.mRNA mRNA upstream 125104 2584692 ~ 2588797 (-) True CI01000113_02585185_02588728
CI01000113_02604593_02611740.mRNA mRNA upstream 144945 2604533 ~ 2611990 (-) True CI01000113_02604593_02611740
TU378401 other downstream 90870 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009
TU378382 other downstream 207988 2250845 ~ 2251213 (-) True G332837
TU378176 other downstream 310643 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 2012364 390227 ~ 446837 (-) True G332160
TU377673 other downstream 2410007 47990 ~ 49194 (-) False G332210

Expression Profile