RNA id: TU377477


Basic Information

Item Value
RNA id TU377477
length 312
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G332037
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2517841 ~ 2518152 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATATGTAAAATTAGCAAACACCATTACAAAAACCACAAACTGACATAAAAAGCAAAGAGTCAAACTGCCCAACTAAATGAAATACTGATCATCATAGTGGTGACATTACATTTTCAATAAAATCAACATCAACATCTAAACCTCTGTTAATTCATGTGTTTCTCTTTCCTTCAGTGATTCTGCTTGTTATCATCAGGTGTCTTCAATGCTGGCAATAAAAAAATAAAATAATTCATCTTTGACGTCTGTCTGTTATTTAGATATTTTTGTTTAAATTTTACTCGTTTTAAATGGTTGACATTTAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377453 lncRNA upstream 58370 2459189 ~ 2459471 (+) True G332017
TU377412 lncRNA upstream 61334 2379240 ~ 2456507 (+) True G331981
TU377413 lncRNA upstream 112853 2392317 ~ 2404988 (+) True G331982
TU377410 lncRNA upstream 145838 2371802 ~ 2372003 (+) True G331979
TU377409 lncRNA upstream 147264 2370374 ~ 2370577 (+) True G331978
TU377445 lncRNA downstream 19593 2537745 ~ 2538362 (+) True G332009
TU377479 lncRNA downstream 22275 2540427 ~ 2540655 (+) True G332039
TU377483 lncRNA downstream 37621 2555773 ~ 2557247 (+) True G332042
TU377447 lncRNA downstream 84186 2602338 ~ 2604908 (+) True G332011
TU377495 lncRNA downstream 184782 2702934 ~ 2703362 (+) True G332054
CI01000113_02418950_02434326.mRNA mRNA upstream 83385 2418950 ~ 2434456 (+) True CI01000113_02418950_02434326
CI01000113_02387553_02403367.mRNA mRNA upstream 114474 2387553 ~ 2403367 (+) True CI01000113_02387553_02403367
CI01000113_02342987_02345449.mRNA mRNA upstream 171835 2342987 ~ 2346006 (+) False CI01000113_02342987_02345449
CI01000113_02321704_02328603.mRNA mRNA upstream 188978 2321704 ~ 2328863 (+) True CI01000113_02321704_02328603
CI01000113_02300492_02320320.mRNA mRNA upstream 197271 2297820 ~ 2320570 (+) True CI01000113_02300492_02320320
CI01000113_02548934_02576888.mRNA mRNA downstream 30782 2548934 ~ 2577790 (+) False CI01000113_02548934_02576888
CI01000113_02623348_02657507.mRNA mRNA downstream 104985 2623137 ~ 2657507 (+) True CI01000113_02623348_02657507
CI01000113_02685260_02707606.mRNA mRNA downstream 167108 2685260 ~ 2708849 (+) True CI01000113_02685260_02707606
TU377377 other upstream 165971 2351665 ~ 2351870 (+) True G331958
TU377135 other upstream 688938 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 735540 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 823971 1668002 ~ 1668035 (+) True G331759
TU377162 other upstream 854586 1662785 ~ 1663255 (+) True G331767
TU377442 other downstream 50615 2568767 ~ 2587700 (+) True G332006

Expression Profile