Item | Value |
---|---|
RNA id | TU378417 |
length | 1568 |
lncRNA type | antisense_over |
GC content | 0.51 |
exon number | 11 |
gene id | G332863 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000113 |
NCBI id | null |
chromosome length | 2886875 |
location | 2551528 ~ 2564174 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU378490 | lncRNA | downstream | 53823 | 2497438 ~ 2497705 (-) | True | G332925 |
TU378484 | lncRNA | downstream | 87965 | 2463319 ~ 2463563 (-) | True | G332919 |
TU378482 | lncRNA | downstream | 91940 | 2459201 ~ 2459588 (-) | True | G332917 |
TU378480 | lncRNA | downstream | 92001 | 2459201 ~ 2459527 (-) | False | G332917 |
TU378460 | lncRNA | downstream | 96378 | 2428858 ~ 2455150 (-) | True | G332898 |
TU378534 | lncRNA | upstream | 3266 | 2567440 ~ 2567846 (-) | True | G332960 |
TU378535 | lncRNA | upstream | 3698 | 2567872 ~ 2568105 (-) | True | G332961 |
TU378536 | lncRNA | upstream | 4479 | 2568653 ~ 2577002 (-) | False | G332962 |
TU378540 | lncRNA | upstream | 12122 | 2576296 ~ 2577002 (-) | False | G332962 |
TU378541 | lncRNA | upstream | 12122 | 2576296 ~ 2577002 (-) | True | G332962 |
CI01000113_02542996_02548587.mRNA | mRNA | downstream | 2941 | 2542996 ~ 2548587 (-) | True | CI01000113_02542996_02548587 |
CI01000113_02491883_02493061.mRNA | mRNA | downstream | 57953 | 2490653 ~ 2493575 (-) | True | CI01000113_02491883_02493061 |
CI01000113_02479865_02481505.mRNA | mRNA | downstream | 68002 | 2478817 ~ 2483526 (-) | True | CI01000113_02479865_02481505 |
CI01000113_02356565_02370009.mRNA | mRNA | downstream | 181519 | 2356565 ~ 2370009 (-) | False | CI01000113_02356565_02370009 |
CI01000113_02348726_02354574.mRNA | mRNA | downstream | 196954 | 2348606 ~ 2354574 (-) | True | CI01000113_02348726_02354574 |
CI01000113_02585185_02588728.mRNA | mRNA | upstream | 20518 | 2584692 ~ 2588797 (-) | True | CI01000113_02585185_02588728 |
CI01000113_02604593_02611740.mRNA | mRNA | upstream | 40359 | 2604533 ~ 2611990 (-) | True | CI01000113_02604593_02611740 |
CI01000113_02614236_02620012.mRNA | mRNA | upstream | 50052 | 2614226 ~ 2620012 (-) | True | CI01000113_02614236_02620012 |
CI01000113_02719034_02729100.mRNA | mRNA | upstream | 154568 | 2718742 ~ 2729100 (-) | True | CI01000113_02719034_02729100 |
CI01000113_02791507_02858943.mRNA | mRNA | upstream | 226384 | 2790558 ~ 2859353 (-) | True | CI01000113_02791507_02858943 |
TU378401 | other | downstream | 183197 | 2367616 ~ 2368331 (-) | True | CI01000113_02356565_02370009 |
TU378382 | other | downstream | 300315 | 2250845 ~ 2251213 (-) | True | G332837 |
TU378176 | other | downstream | 402970 | 2147214 ~ 2148558 (-) | True | G332649 |
TU377621 | other | downstream | 2104691 | 390227 ~ 446837 (-) | True | G332160 |
TU377673 | other | downstream | 2502334 | 47990 ~ 49194 (-) | False | G332210 |