RNA id: TU378417



Basic Information


Item Value
RNA id TU378417
length 1568
lncRNA type antisense_over
GC content 0.51
exon number 11
gene id G332863
representative True

Chromosome Information


Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2551528 ~ 2564174 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTTTTTTTATAAAGCTGGACTGTATTTTAACAGCTTCAATCTGTTATTTTGAACATGATAATGAATGATGATGAAAATGATAAATTCTGGTTACACAACAAGAATGTGCATTTTACTCATCTCTCAACACCTTGTTTTGACGCAATGGACAGACAAGAAACGTCAAAAAAAAAGACGTGCTGTCAAAACAGCATGTGCTGTCAAAACATGTTCTGCACCACGTTTCACCTGACAGTTTCGGTGAACACATCTCCTGTGTGAGAGTGAACGTGACAAGGGCAAAGACCAACCTTGTCGTGAGCTTTCTCTGTGAGTCGTGCCGTCATCAAGCCAGGTTCACATCCCAGGGCGGGAAGAGGGTCAGGCACTTCCCACACCTTGATAGTGCAGTCCTGACTGCCTGACACCAGGAAGACTTTCTTTAACCTGGAGCAGGCGATAGAGCCCACGGCATTGGAGTGTCCGCTGCCCTGAGCCACGCAGTGCACAAGGCCGCTCGTCGGATCCATCTTCCACAGCCGCAAGGACTTGTCCTTTGCACAGCTGGCAAACATGGAGCCTTTGCAGAACACCTCAATAGATAGGATTGTATCTGTGTGTCCATACAGAATCTGACAGCTGTTAGTGGCCAACTCAAACACCTTCAGCTGAGAGCTGTTAGTGGCCACAACGATGTGCGTGTCGTCCTTCCCCAGGAACTTCACATCCAAGATATCATCATTGTAGCCCACAAACTGCTGCTGTATGGTGAGCGAGGGCATCTGATAGATGAGGATGTTGTGCTCTGCGGTGACTGTGGCCAGTCTGTTGGACTGAGGCATGGGCAGAAGGTGCATCAGACTGCGCGGGTCCAGATCGGCCTCCTCTGTGCTGAGAGCTGGAGCGTCAGGCAGCGTCTGCGTGAACACACAGCGCGCTGAGCTGGAGTCCCACACTCGAAGAACACCTTTACTGCCAGCCGTGACAAAGTGTAAACTGTCACTCTTCACACCCATCTGAGAGTAATCGCCCGTCCCCGGCAAAAGAACAACACCTTCCACAGCCTCATAGACAGGGACTGTCCTCTTCACCGCCTTCTCCTTCAGGTCCCACACTGAACAGATTTTGTCTCGGCCAGAACTGACGAGTGTTTGGCCATCAGGAGAGAAGGCCAGCGATGTGACGGCACTGTAGTGGCTCTCCAAAATGCAGACGCACTTGCTGGTTCGCAGATCCCAGATACGGATCCCACAGTCGACAGAGGAAGAGAAGAGCTGCAGCCTGCTGATGTCTGGATGAAACTCAACCAAATGTACAACACCAGATGATCCTTTCAGATTGTGTGTGCAGTACTGCTTCACAACATCCCACAGCTTGATGGTGCCATCACAACCTCCTGTCGCCAGCAGGGTGGTGGTGCAGTCAAAGGTCATGCTGGCCACAGGCACATTGTGGATGGCCCTCCACGACCGGGTGCACTTCTCCTGCTTCCAGTCCCACTGCTTCAAGAGCAAAGCCCTGCTGGCGGTCACCAGCATCTCATCATCAGGACTGAGAGAGAATGAGGTGATGTCCTCTTGATCATCC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU378490 lncRNA downstream 53823 2497438 ~ 2497705 (-) True G332925
TU378484 lncRNA downstream 87965 2463319 ~ 2463563 (-) True G332919
TU378482 lncRNA downstream 91940 2459201 ~ 2459588 (-) True G332917
TU378480 lncRNA downstream 92001 2459201 ~ 2459527 (-) False G332917
TU378460 lncRNA downstream 96378 2428858 ~ 2455150 (-) True G332898
TU378534 lncRNA upstream 3266 2567440 ~ 2567846 (-) True G332960
TU378535 lncRNA upstream 3698 2567872 ~ 2568105 (-) True G332961
TU378536 lncRNA upstream 4479 2568653 ~ 2577002 (-) False G332962
TU378540 lncRNA upstream 12122 2576296 ~ 2577002 (-) False G332962
TU378541 lncRNA upstream 12122 2576296 ~ 2577002 (-) True G332962
CI01000113_02542996_02548587.mRNA mRNA downstream 2941 2542996 ~ 2548587 (-) True CI01000113_02542996_02548587
CI01000113_02491883_02493061.mRNA mRNA downstream 57953 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
CI01000113_02479865_02481505.mRNA mRNA downstream 68002 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02356565_02370009.mRNA mRNA downstream 181519 2356565 ~ 2370009 (-) False CI01000113_02356565_02370009
CI01000113_02348726_02354574.mRNA mRNA downstream 196954 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
CI01000113_02585185_02588728.mRNA mRNA upstream 20518 2584692 ~ 2588797 (-) True CI01000113_02585185_02588728
CI01000113_02604593_02611740.mRNA mRNA upstream 40359 2604533 ~ 2611990 (-) True CI01000113_02604593_02611740
CI01000113_02614236_02620012.mRNA mRNA upstream 50052 2614226 ~ 2620012 (-) True CI01000113_02614236_02620012
CI01000113_02719034_02729100.mRNA mRNA upstream 154568 2718742 ~ 2729100 (-) True CI01000113_02719034_02729100
CI01000113_02791507_02858943.mRNA mRNA upstream 226384 2790558 ~ 2859353 (-) True CI01000113_02791507_02858943
TU378401 other downstream 183197 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009
TU378382 other downstream 300315 2250845 ~ 2251213 (-) True G332837
TU378176 other downstream 402970 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 2104691 390227 ~ 446837 (-) True G332160
TU377673 other downstream 2502334 47990 ~ 49194 (-) False G332210

Expression Profile