RNA id: TU378541


Basic Information

Item Value
RNA id TU378541
length 497
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G332962
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2568653 ~ 2577002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAATTCATGACCCATTTAACCCTGGGTATGCGCAAAAATAATGATTCTTTCCTTAGCAAATACCGCTGACTAGTTAATGAATACACAACCAGGAAGTTTGGAGAACTTGTTTTTACCTCTCTTTACCACCTGTAATACGCATTTTCTGCCACATGTAATCCAGAAACATTGAGGCCTGCAGGAGACGGCCGATTCTCTGCATGTGTCTCTCTGTGTACGGGATGAGGCCCTCGAGATGAGTCCGAGCCCCCTGATACTGCAGCATCTCCTCTGGGCTCAGGTGAGTGAGCAGCACCTGCAGGACGGCCTGAGCGTCCAGACAGCTGCGCGAGTTAGTGTTCCACACCACACAGTAGCGCAGCACCGACTCTTTTTGATCCTGACGGAGTTTCAGGAGGGTCTTTTCTAGCTCCTGTAGTCCATGCTCCTGCTGCCGAATTTCTGTTAAAGATTAAAGTACATATCTTCATGATTAATTATCACACTTTAGTTTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378535 lncRNA downstream 8191 2567872 ~ 2568105 (-) True G332961
TU378534 lncRNA downstream 8450 2567440 ~ 2567846 (-) True G332960
TU378417 lncRNA downstream 12122 2551528 ~ 2564174 (-) True G332863
TU378490 lncRNA downstream 78591 2497438 ~ 2497705 (-) True G332925
TU378484 lncRNA downstream 112733 2463319 ~ 2463563 (-) True G332919
TU378553 lncRNA upstream 13160 2590162 ~ 2590626 (-) True G332974
TU378554 lncRNA upstream 15281 2592283 ~ 2592482 (-) True G332975
TU378556 lncRNA upstream 21834 2598836 ~ 2599120 (-) True G332977
TU378557 lncRNA upstream 22556 2599558 ~ 2599769 (-) True G332978
TU378498 lncRNA upstream 119223 2696225 ~ 2696794 (-) True G332931
CI01000113_02542996_02548587.mRNA mRNA downstream 27709 2542996 ~ 2548587 (-) True CI01000113_02542996_02548587
CI01000113_02491883_02493061.mRNA mRNA downstream 82721 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
CI01000113_02479865_02481505.mRNA mRNA downstream 92770 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02356565_02370009.mRNA mRNA downstream 206287 2356565 ~ 2370009 (-) False CI01000113_02356565_02370009
CI01000113_02348726_02354574.mRNA mRNA downstream 221722 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
CI01000113_02585185_02588728.mRNA mRNA upstream 7690 2584692 ~ 2588797 (-) True CI01000113_02585185_02588728
CI01000113_02604593_02611740.mRNA mRNA upstream 27531 2604533 ~ 2611990 (-) True CI01000113_02604593_02611740
CI01000113_02614236_02620012.mRNA mRNA upstream 37224 2614226 ~ 2620012 (-) True CI01000113_02614236_02620012
CI01000113_02719034_02729100.mRNA mRNA upstream 141740 2718742 ~ 2729100 (-) True CI01000113_02719034_02729100
CI01000113_02791507_02858943.mRNA mRNA upstream 213556 2790558 ~ 2859353 (-) True CI01000113_02791507_02858943
TU378401 other downstream 207965 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009
TU378382 other downstream 325083 2250845 ~ 2251213 (-) True G332837
TU378176 other downstream 427738 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 2129459 390227 ~ 446837 (-) True G332160
TU377673 other downstream 2527102 47990 ~ 49194 (-) False G332210

Expression Profile