RNA id: TU378556


Basic Information

Item Value
RNA id TU378556
length 285
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G332977
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2598836 ~ 2599120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAATACCTATTTCTTCTGTCAAAATCAACTTCAATAATTAATGTCATTCAGATAACATAATATTTTGAGTTTCTGTTGATTAAACCAATCGCCTTCATTGTATTAACTCAAATTTTTAATTTCAATGAACTCAAAAATTTTAAGGCAACCAGGTAACTGTCACGGAATGTGTGTGTAGAATGAAGCGCACGACAGGAATAGTCCAAGAAATAGAATTTAATAAACAAAATCCAGAACAGGGAGAACACAACCACATATAACATAGACGGGAACGGACGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378554 lncRNA downstream 6354 2592283 ~ 2592482 (-) True G332975
TU378553 lncRNA downstream 8210 2590162 ~ 2590626 (-) True G332974
TU378536 lncRNA downstream 21834 2568653 ~ 2577002 (-) False G332962
TU378540 lncRNA downstream 21834 2576296 ~ 2577002 (-) False G332962
TU378541 lncRNA downstream 21834 2576296 ~ 2577002 (-) True G332962
TU378557 lncRNA upstream 438 2599558 ~ 2599769 (-) True G332978
TU378498 lncRNA upstream 97105 2696225 ~ 2696794 (-) True G332931
TU378514 lncRNA upstream 104275 2703395 ~ 2704698 (-) True G332940
TU378519 lncRNA upstream 148636 2747756 ~ 2755692 (-) True G332945
TU378510 lncRNA upstream 187197 2786317 ~ 2788496 (-) True G332937
CI01000113_02585185_02588728.mRNA mRNA downstream 10039 2584692 ~ 2588797 (-) True CI01000113_02585185_02588728
CI01000113_02542996_02548587.mRNA mRNA downstream 50249 2542996 ~ 2548587 (-) True CI01000113_02542996_02548587
CI01000113_02491883_02493061.mRNA mRNA downstream 105261 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
CI01000113_02479865_02481505.mRNA mRNA downstream 115310 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02356565_02370009.mRNA mRNA downstream 228827 2356565 ~ 2370009 (-) False CI01000113_02356565_02370009
CI01000113_02604593_02611740.mRNA mRNA upstream 5413 2604533 ~ 2611990 (-) True CI01000113_02604593_02611740
CI01000113_02614236_02620012.mRNA mRNA upstream 15106 2614226 ~ 2620012 (-) True CI01000113_02614236_02620012
CI01000113_02719034_02729100.mRNA mRNA upstream 119622 2718742 ~ 2729100 (-) True CI01000113_02719034_02729100
CI01000113_02791507_02858943.mRNA mRNA upstream 191438 2790558 ~ 2859353 (-) True CI01000113_02791507_02858943
TU378401 other downstream 230505 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009
TU378382 other downstream 347623 2250845 ~ 2251213 (-) True G332837
TU378176 other downstream 450278 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 2151999 390227 ~ 446837 (-) True G332160
TU377673 other downstream 2549642 47990 ~ 49194 (-) False G332210

Expression Profile