Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU377447 |
| length | 2531 |
| lncRNA type | antisense_over |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G332011 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 2602338 ~ 2604908 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU377483 | lncRNA | upstream | 45091 | 2555773 ~ 2557247 (+) | True | G332042 |
| TU377479 | lncRNA | upstream | 61683 | 2540427 ~ 2540655 (+) | True | G332039 |
| TU377445 | lncRNA | upstream | 63976 | 2537745 ~ 2538362 (+) | True | G332009 |
| TU377477 | lncRNA | upstream | 84186 | 2517841 ~ 2518152 (+) | True | G332037 |
| TU377453 | lncRNA | upstream | 142867 | 2459189 ~ 2459471 (+) | True | G332017 |
| TU377495 | lncRNA | downstream | 98026 | 2702934 ~ 2703362 (+) | True | G332054 |
| TU377498 | lncRNA | downstream | 106768 | 2711676 ~ 2711928 (+) | True | G332057 |
| TU377499 | lncRNA | downstream | 107249 | 2712157 ~ 2712373 (+) | True | G332058 |
| TU377540 | lncRNA | downstream | 180512 | 2785420 ~ 2785663 (+) | True | G332098 |
| TU377511 | lncRNA | downstream | 182278 | 2787186 ~ 2788491 (+) | True | G332069 |
| CI01000113_02548934_02576888.mRNA | mRNA | upstream | 24548 | 2548934 ~ 2577790 (+) | False | CI01000113_02548934_02576888 |
| CI01000113_02418950_02434326.mRNA | mRNA | upstream | 167882 | 2418950 ~ 2434456 (+) | True | CI01000113_02418950_02434326 |
| CI01000113_02387553_02403367.mRNA | mRNA | upstream | 198971 | 2387553 ~ 2403367 (+) | True | CI01000113_02387553_02403367 |
| CI01000113_02342987_02345449.mRNA | mRNA | upstream | 256332 | 2342987 ~ 2346006 (+) | False | CI01000113_02342987_02345449 |
| CI01000113_02321704_02328603.mRNA | mRNA | upstream | 273475 | 2321704 ~ 2328863 (+) | True | CI01000113_02321704_02328603 |
| CI01000113_02623348_02657507.mRNA | mRNA | downstream | 18229 | 2623137 ~ 2657507 (+) | True | CI01000113_02623348_02657507 |
| CI01000113_02685260_02707606.mRNA | mRNA | downstream | 80352 | 2685260 ~ 2708849 (+) | True | CI01000113_02685260_02707606 |
| TU377442 | other | upstream | 14638 | 2568767 ~ 2587700 (+) | True | G332006 |
| TU377377 | other | upstream | 250468 | 2351665 ~ 2351870 (+) | True | G331958 |
| TU377135 | other | upstream | 773435 | 1828809 ~ 1828903 (+) | True | G331759 |
| TU377145 | other | upstream | 820037 | 1668002 ~ 1782301 (+) | True | G331759 |
| TU377129 | other | upstream | 908468 | 1668002 ~ 1668035 (+) | True | G331759 |
