RNA id: TU377540


Basic Information

Item Value
RNA id TU377540
length 244
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G332098
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2785420 ~ 2785663 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCATTTCTGACGGAGGTGGCGTTTAGCTGCTTTTGCATCGTAAGTCTTCAAATATACTTTATGTATTTAATCTCACTTCATTAACCAGTGTCTTTGCTGCTGACCTTAGGTGATCCAGTGTTGAACTTTCGTCTCCTGCGTCCTATTCTTCTGCGATCCAGAATGGCAGCACAGCTGAAAGGTTTGTTTGAGCTGCGCCCTCTACTGCACAGACGTGAATATGCATTTCCTTCGGCTTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377499 lncRNA upstream 73047 2712157 ~ 2712373 (+) True G332058
TU377498 lncRNA upstream 73492 2711676 ~ 2711928 (+) True G332057
TU377495 lncRNA upstream 82058 2702934 ~ 2703362 (+) True G332054
TU377447 lncRNA upstream 180512 2602338 ~ 2604908 (+) True G332011
TU377483 lncRNA upstream 228173 2555773 ~ 2557247 (+) True G332042
TU377511 lncRNA downstream 1523 2787186 ~ 2788491 (+) True G332069
TU377545 lncRNA downstream 9920 2795583 ~ 2803940 (+) True G332102
TU377587 lncRNA downstream 75918 2861581 ~ 2861898 (+) True G332143
TU378602 lncRNA downstream 83428 2869091 ~ 2869320 (+) True G333019
TU378603 lncRNA downstream 86867 2872530 ~ 2872730 (+) True G333020
CI01000113_02685260_02707606.mRNA mRNA upstream 76571 2685260 ~ 2708849 (+) True CI01000113_02685260_02707606
CI01000113_02623348_02657507.mRNA mRNA upstream 127913 2623137 ~ 2657507 (+) True CI01000113_02623348_02657507
CI01000113_02548934_02576888.mRNA mRNA upstream 207630 2548934 ~ 2577790 (+) False CI01000113_02548934_02576888
CI01000113_02418950_02434326.mRNA mRNA upstream 350964 2418950 ~ 2434456 (+) True CI01000113_02418950_02434326
CI01000113_02387553_02403367.mRNA mRNA upstream 382053 2387553 ~ 2403367 (+) True CI01000113_02387553_02403367
TU377442 other upstream 197720 2568767 ~ 2587700 (+) True G332006
TU377377 other upstream 433550 2351665 ~ 2351870 (+) True G331958
TU377135 other upstream 956517 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 1003119 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 1091550 1668002 ~ 1668035 (+) True G331759

Expression Profile