RNA id: TU377545


Basic Information

Item Value
RNA id TU377545
length 1041
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G332102
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2795583 ~ 2803940 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATGAGTGTGTCAGTCAGTAGCGAAGACTTTTACATTGAAAAGACTGAATTGTTGTGAACACAGAACAAGACGCAACTGACAAATGCTTTGACTAGCGCTGTCAGTCACGGGAAAACCCCTTAACTGTTAAAAGGACAAGATAATACATCGGACATTTAAACAGATTTTTTATTATGAACATAGGACTGACCTGAAGGAAAATGCTAAATCTGAATGCAGGTAATAAACTCGCTCACTCGATCTCTTTCTCACAACACTCTTCTACATAATACAGTAAGCTCCAATTACAATTAACAATATCAATTGAGAACATACAGTTTACGTTGCTAAGAGTGGCTGCTAAGGGTGTTGCATAGTGATACACAGAACCGTTGGGTGAAGCGGTCATAGCCGTGTTTTATGTCAATTAAGTGTCCCAAAACAGTTTGTACGATGTTCTTTTAAATTATATTATTTCTGTAATAAGTACTCATTTGCTAAAATGTACTTCCTATAGGGTAGTATTATAAATGCTGTTTGGAGTAACCACATTTTGTTATAAAACCAATATACACACACACACAACACACGACAGTTGAATTGCTCAGATTTACATTTCCTTATCTTGACTTGTTTGAGACGCATCCTACTGTGTATTTTTGCTTCACTCCATGTTTCTTCATCAGTCTTATACATAAACAACAGAAAGCAGCCGCCCCCAGTAATAGCCACATAAATGCATCTACCGTGGTAGGAAAAACATAGTTGACACATATACCATCATACCGCCCGGCCTTACCCCCATCATCATGATGGTAAACACATTTGAAAGCAACTACAGCAATCTTTTGTGCAGCAACCTTGTTTATAGTGTTAATACAGTTTGTAGAGCATGTTTTTGAAATAGGTGACTTCTCCAGATGTGCCTTTATGTGACGAAGGATGTCAGTGATCTAAAATGCTCGGATTCACCAAGGGCTCATTAAACGCTGCTGTTTAGCCAATGATGAATCATTGTGTATAACGCCTTTTTTTTTCAAATGTTTCCTGACATGGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377511 lncRNA upstream 7092 2787186 ~ 2788491 (+) True G332069
TU377540 lncRNA upstream 9920 2785420 ~ 2785663 (+) True G332098
TU377499 lncRNA upstream 83210 2712157 ~ 2712373 (+) True G332058
TU377498 lncRNA upstream 83655 2711676 ~ 2711928 (+) True G332057
TU377495 lncRNA upstream 92221 2702934 ~ 2703362 (+) True G332054
TU377587 lncRNA downstream 57641 2861581 ~ 2861898 (+) True G332143
TU378602 lncRNA downstream 65151 2869091 ~ 2869320 (+) True G333019
TU378603 lncRNA downstream 68590 2872530 ~ 2872730 (+) True G333020
CI01000113_02685260_02707606.mRNA mRNA upstream 86734 2685260 ~ 2708849 (+) True CI01000113_02685260_02707606
CI01000113_02623348_02657507.mRNA mRNA upstream 138076 2623137 ~ 2657507 (+) True CI01000113_02623348_02657507
CI01000113_02548934_02576888.mRNA mRNA upstream 217793 2548934 ~ 2577790 (+) False CI01000113_02548934_02576888
CI01000113_02418950_02434326.mRNA mRNA upstream 361127 2418950 ~ 2434456 (+) True CI01000113_02418950_02434326
CI01000113_02387553_02403367.mRNA mRNA upstream 392216 2387553 ~ 2403367 (+) True CI01000113_02387553_02403367
TU377442 other upstream 207883 2568767 ~ 2587700 (+) True G332006
TU377377 other upstream 443713 2351665 ~ 2351870 (+) True G331958
TU377135 other upstream 966680 1828809 ~ 1828903 (+) True G331759
TU377145 other upstream 1013282 1668002 ~ 1782301 (+) True G331759
TU377129 other upstream 1101713 1668002 ~ 1668035 (+) True G331759

Expression Profile