RNA id: TU384698


Basic Information

Item Value
RNA id TU384698
length 502
lncRNA type antisense_over
GC content 0.47
exon number 6
gene id G338219
representative True

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 561956 ~ 567392 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCCTCCTTGACCTCCTTCTTGACTTGTTTCAGATTGGCTCTCAGATCCAGAGACACCTTGTGCTTGGAGCCCAGCAGAGCCTGAAGCATTTGATCGGCAGACATGCGCACTTTTCTCAACACTGGTTTCTTGAACTTGCCCTTCAGGTCAATAACTTTGATATTTAGGTCTTCAATCTCTTTGCACACTTATTGACCTTCATTTCCATATCATATCTCTCCTCGTCAGTGACATCAATTTTGTGGTGAAGCTCCCTGCACAGTTCCTGTAATGCCTGCACGCCTCCAGGTAGAGACAGAGGTTTGCAGGCTTCTGACATGTATTTCTGCCTCTCAACCTCTCTGTCCTTTACTTCCTGTTCCAGTATACCTTTAGCGATGCCAAGCATCAAGCTCTTTAGATGATGCTTGCGACTCGAGGACATCTTTTTCTCCGACATCTTGGCTGAATTTTGATTTTGCCCCCTATGAGCTGAGGCACACACAGCCTGGAGAATGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384762 lncRNA upstream 2266 559452 ~ 559690 (+) True G338283
TU384760 lncRNA upstream 5393 556345 ~ 556563 (+) True G338281
TU384686 lncRNA upstream 7323 538836 ~ 554633 (+) True G338209
TU384752 lncRNA upstream 34108 527626 ~ 527848 (+) True G338273
TU384702 lncRNA upstream 97523 414214 ~ 464433 (+) True G338223
TU384768 lncRNA downstream 14598 581990 ~ 582195 (+) True G338289
TU384767 lncRNA downstream 15414 582806 ~ 583474 (+) True G338288
TU384769 lncRNA downstream 17597 584989 ~ 585217 (+) True G338290
TU384771 lncRNA downstream 25342 592734 ~ 595382 (+) False G338292
TU384773 lncRNA downstream 25342 592734 ~ 593697 (+) False G338292
CI01000120_00477162_00480891.mRNA mRNA upstream 80831 476999 ~ 481125 (+) True CI01000120_00477162_00480891
CI01000120_00459245_00460500.mRNA mRNA upstream 100913 459027 ~ 461043 (+) True CI01000120_00459245_00460500
CI01000120_00451804_00456525.mRNA mRNA upstream 104182 449530 ~ 457774 (+) True CI01000120_00451804_00456525
CI01000120_00322439_00323110.mRNA mRNA upstream 238744 322347 ~ 323212 (+) True CI01000120_00322439_00323110
CI01000120_00308876_00311801.mRNA mRNA upstream 250056 308688 ~ 311900 (+) True CI01000120_00308876_00311801
CI01000120_00612213_00613803.mRNA mRNA downstream 44821 612213 ~ 614230 (+) True CI01000120_00612213_00613803
CI01000120_00639875_00643491.mRNA mRNA downstream 71659 639051 ~ 643520 (+) True CI01000120_00639875_00643491
CI01000120_00704598_00707678.mRNA mRNA downstream 136895 704287 ~ 708495 (+) False CI01000120_00704598_00707678
CI01000120_00731213_00760512.mRNA mRNA downstream 163588 730980 ~ 760760 (+) False CI01000120_00731213_00760512
CI01000120_01093808_01118807.mRNA mRNA downstream 526416 1093808 ~ 1118807 (+) True CI01000120_01093808_01118807
TU384877 other downstream 195885 763277 ~ 763643 (+) True G338386
TU384950 other downstream 297166 864558 ~ 865315 (+) True G338458
TU384956 other downstream 311419 878811 ~ 879593 (+) True G338464
TU385001 other downstream 439673 1007065 ~ 1009403 (+) True G338508
TU384999 other downstream 572448 1139840 ~ 1141663 (+) True G338506

Expression Profile