RNA id: TU384841


Basic Information

Item Value
RNA id TU384841
length 421
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G338350
representative True

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 723604 ~ 724024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTATTTTCCTCTCTCTGTTGCTTCTCTTTTTCTTCTCCTGTCTCTGTTTTTCTTTCTATCTGTCTTTATCTTCCTCCAGATACTAGCCCTGGGGGCTGGCCATATTTATGTCTGTACAGGGTCCTGAGCTTTTGGACGTGTGACCTCAGATTTTCACAAAGGTCTATGAGCCCATTCAATGCTTAAAATGCTTGGCTAGAGGGCAGAAACGATGTGACATGGATTCCAAAGGTGTTCTTCAAATATCTTAAAGGCTGTGAAAAATGTTGGTGGGGAGTGAAAGAAAGAGTAAACAGGGGAGGAGAAAGAAAAGAGACACATGGCTTGTAGTAAATTAAGCAAACGTAGGGAAAACCGAGTGGCCTGAGATTCACAGCTACTTAGGGAGGTAAGAAATGGGAGGTTGAGGGAGATAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384840 lncRNA upstream 255 723108 ~ 723349 (+) True G338349
TU384839 lncRNA upstream 1133 721712 ~ 722471 (+) True G338348
TU384838 lncRNA upstream 2834 720056 ~ 720770 (+) True G338347
TU384837 lncRNA upstream 3639 719624 ~ 719965 (+) True G338346
TU384836 lncRNA upstream 4013 718886 ~ 719591 (+) True G338345
TU384843 lncRNA downstream 2399 726423 ~ 726651 (+) True G338352
TU384844 lncRNA downstream 3877 727901 ~ 728340 (+) True G338353
TU384845 lncRNA downstream 4531 728555 ~ 728989 (+) True G338354
TU384846 lncRNA downstream 5618 729642 ~ 730116 (+) True G338355
TU384847 lncRNA downstream 6912 730936 ~ 731210 (+) True CI01000120_00731213_00760512
CI01000120_00704598_00707678.mRNA mRNA upstream 15109 704287 ~ 708495 (+) False CI01000120_00704598_00707678
CI01000120_00639875_00643491.mRNA mRNA upstream 80084 639051 ~ 643520 (+) True CI01000120_00639875_00643491
CI01000120_00612213_00613803.mRNA mRNA upstream 109374 612213 ~ 614230 (+) True CI01000120_00612213_00613803
CI01000120_00477162_00480891.mRNA mRNA upstream 242479 476999 ~ 481125 (+) True CI01000120_00477162_00480891
CI01000120_00459245_00460500.mRNA mRNA upstream 262561 459027 ~ 461043 (+) True CI01000120_00459245_00460500
CI01000120_00731213_00760512.mRNA mRNA downstream 6956 730980 ~ 760760 (+) False CI01000120_00731213_00760512
CI01000120_01093808_01118807.mRNA mRNA downstream 369784 1093808 ~ 1118807 (+) True CI01000120_01093808_01118807
CI01000120_01141788_01144915.mRNA mRNA downstream 417764 1141788 ~ 1145086 (+) False CI01000120_01141788_01144915
CI01000120_01194995_01221974.mRNA mRNA downstream 470971 1194995 ~ 1222463 (+) True CI01000120_01194995_01221974
CI01000120_01233281_01240955.mRNA mRNA downstream 508869 1232893 ~ 1241149 (+) True CI01000120_01233281_01240955
TU384877 other downstream 39253 763277 ~ 763643 (+) True G338386
TU384950 other downstream 140534 864558 ~ 865315 (+) True G338458
TU384956 other downstream 154787 878811 ~ 879593 (+) True G338464
TU385001 other downstream 283041 1007065 ~ 1009403 (+) True G338508
TU384999 other downstream 415816 1139840 ~ 1141663 (+) True G338506

Expression Profile