RNA id: TU384844


Basic Information

Item Value
RNA id TU384844
length 440
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G338353
representative True

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 727901 ~ 728340 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACACTTCCATTGTCGAGGAAACTATGTCTAAGTTTCACCTTTCTAGCTGCTTTTAAAGCACTTATGTAGTTAGCATTCTTGGAGCTATGTTTCACACATAACATGCTACCTTTAAAAAGTTATGAAGAGTTCTTGTATGCTATTTTTTCCCTTTGATTTAAATTTTTATGACAAATATGGCTTAATGCAAGAGCAAAGATCTCATATGAGTCCTGGAAAAATTCAATGGTCAACAAATATATGAAAATGCTGTTCAAATGAGATGATTTCATTATAGTAGGTAAACATCTTCCCTTCCTAGGGCCTCACTAACACACCAAATTCAAAATAAGTGACCATAAATGGTCATCTTAGCAATGTGTCTTTGGGACTAATCTTAATGTCCTGTCTCAGAGAACAGCCAAAGGAAAACACACTCCACTCACACGGACACCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384843 lncRNA upstream 1250 726423 ~ 726651 (+) True G338352
TU384841 lncRNA upstream 3877 723604 ~ 724024 (+) True G338350
TU384840 lncRNA upstream 4552 723108 ~ 723349 (+) True G338349
TU384839 lncRNA upstream 5430 721712 ~ 722471 (+) True G338348
TU384838 lncRNA upstream 7131 720056 ~ 720770 (+) True G338347
TU384845 lncRNA downstream 215 728555 ~ 728989 (+) True G338354
TU384846 lncRNA downstream 1302 729642 ~ 730116 (+) True G338355
TU384847 lncRNA downstream 2596 730936 ~ 731210 (+) True CI01000120_00731213_00760512
TU384848 lncRNA downstream 3251 731591 ~ 731791 (+) True G338357
TU384849 lncRNA downstream 4611 732951 ~ 733497 (+) True G338358
CI01000120_00704598_00707678.mRNA mRNA upstream 19406 704287 ~ 708495 (+) False CI01000120_00704598_00707678
CI01000120_00639875_00643491.mRNA mRNA upstream 84381 639051 ~ 643520 (+) True CI01000120_00639875_00643491
CI01000120_00612213_00613803.mRNA mRNA upstream 113671 612213 ~ 614230 (+) True CI01000120_00612213_00613803
CI01000120_00477162_00480891.mRNA mRNA upstream 246776 476999 ~ 481125 (+) True CI01000120_00477162_00480891
CI01000120_00459245_00460500.mRNA mRNA upstream 266858 459027 ~ 461043 (+) True CI01000120_00459245_00460500
CI01000120_00731213_00760512.mRNA mRNA downstream 2640 730980 ~ 760760 (+) False CI01000120_00731213_00760512
CI01000120_01093808_01118807.mRNA mRNA downstream 365468 1093808 ~ 1118807 (+) True CI01000120_01093808_01118807
CI01000120_01141788_01144915.mRNA mRNA downstream 413448 1141788 ~ 1145086 (+) False CI01000120_01141788_01144915
CI01000120_01194995_01221974.mRNA mRNA downstream 466655 1194995 ~ 1222463 (+) True CI01000120_01194995_01221974
CI01000120_01233281_01240955.mRNA mRNA downstream 504553 1232893 ~ 1241149 (+) True CI01000120_01233281_01240955
TU384877 other downstream 34937 763277 ~ 763643 (+) True G338386
TU384950 other downstream 136218 864558 ~ 865315 (+) True G338458
TU384956 other downstream 150471 878811 ~ 879593 (+) True G338464
TU385001 other downstream 278725 1007065 ~ 1009403 (+) True G338508
TU384999 other downstream 411500 1139840 ~ 1141663 (+) True G338506

Expression Profile