RNA id: TU384849


Basic Information

Item Value
RNA id TU384849
length 547
lncRNA type intronic
GC content 0.37
exon number 1
gene id G338358
representative True

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 732951 ~ 733497 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGACATCTAAGAATTGCCTTGGTGGCACAGACAAGGCCAGATTAAGGTCATTGAACAGGACAGAGGCACTATAATGGATGCAAGTGTTGATACAGGCAAAACACGTACATGAACTCTGTTCCAAAACTTAGTGATCTGCCATCTTTTTTACTGTCTACATAGGCAGCTTGCTTCTATATCACATCTAAAAAAAAAAACCTCTTATGTCACTGACTTAAAAAAGCCTCTTCATTGGCAGCAACTGATAGTTCATCCAGAAATGAAAATTGTCATCATTTGTCATTGTCAATATGGAGATTAAATGTCTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCACAGAAGTAAGTCATTCAGGTTTGTAACGACATGAGGGTGAGTAAATGATAACAGATTTCATTTTGGGGAAACATACTCTACATAAAAAACACTTTTCAGGTGAAAGGCACAAAAGAGTCTGAATTTAACATGTTATTACCTAGTTCTGGCATGTAACTCTAGATTGCGTAGGCTGATAGGCATTTAACTCAATTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384848 lncRNA upstream 1160 731591 ~ 731791 (+) True G338357
TU384847 lncRNA upstream 1741 730936 ~ 731210 (+) True CI01000120_00731213_00760512
TU384846 lncRNA upstream 2835 729642 ~ 730116 (+) True G338355
TU384845 lncRNA upstream 3962 728555 ~ 728989 (+) True G338354
TU384844 lncRNA upstream 4611 727901 ~ 728340 (+) True G338353
TU384850 lncRNA downstream 788 734285 ~ 734602 (+) True G338359
TU384851 lncRNA downstream 1133 734630 ~ 734935 (+) True G338360
TU384852 lncRNA downstream 1719 735216 ~ 735703 (+) True G338361
TU384853 lncRNA downstream 2672 736169 ~ 736652 (+) True G338362
TU384854 lncRNA downstream 3291 736788 ~ 737377 (+) True G338363
CI01000120_00704598_00707678.mRNA mRNA upstream 24456 704287 ~ 708495 (+) False CI01000120_00704598_00707678
CI01000120_00639875_00643491.mRNA mRNA upstream 89431 639051 ~ 643520 (+) True CI01000120_00639875_00643491
CI01000120_00612213_00613803.mRNA mRNA upstream 118721 612213 ~ 614230 (+) True CI01000120_00612213_00613803
CI01000120_00477162_00480891.mRNA mRNA upstream 251826 476999 ~ 481125 (+) True CI01000120_00477162_00480891
CI01000120_00459245_00460500.mRNA mRNA upstream 271908 459027 ~ 461043 (+) True CI01000120_00459245_00460500
CI01000120_01093808_01118807.mRNA mRNA downstream 360311 1093808 ~ 1118807 (+) True CI01000120_01093808_01118807
CI01000120_01141788_01144915.mRNA mRNA downstream 408291 1141788 ~ 1145086 (+) False CI01000120_01141788_01144915
CI01000120_01194995_01221974.mRNA mRNA downstream 461498 1194995 ~ 1222463 (+) True CI01000120_01194995_01221974
CI01000120_01233281_01240955.mRNA mRNA downstream 499396 1232893 ~ 1241149 (+) True CI01000120_01233281_01240955
TU384877 other downstream 29780 763277 ~ 763643 (+) True G338386
TU384950 other downstream 131061 864558 ~ 865315 (+) True G338458
TU384956 other downstream 145314 878811 ~ 879593 (+) True G338464
TU385001 other downstream 273568 1007065 ~ 1009403 (+) True G338508
TU384999 other downstream 406343 1139840 ~ 1141663 (+) True G338506

Expression Profile