RNA id: TU384883


Basic Information

Item Value
RNA id TU384883
length 324
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G338392
representative True

Chromosome Information

Item Value
chromosome id CI01000120
NCBI id null
chromosome length 1315255
location 771655 ~ 771978 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAATCAGTGGACATAGGCTGAACTCTGACATCATCTGTGTGCTAATTGACATGGGAAACTCGTCTGTGTACAATTTAAGGAAATTACAATGTTTGGTTGTTGGTGCAACATTGCAATCTGTGGGCCTGATAACAACTACCGAGTCCCCTGAAAGTATCCAACTGCGTTCGGAGCAATCCATCAGTCTAATTGCTGTACTTATCATTGATGAAAAAAGGTATACAAATGATCAGTGGCTTTGGTCTAGAAGCTCAAGCAGCGTCCCGCTAACGTTGAGCCAAGAAATCAGCTACAGATGACCCCAAACTAGTGATGAAATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384882 lncRNA upstream 114 771254 ~ 771541 (+) True G338391
TU384881 lncRNA upstream 2182 769125 ~ 769473 (+) True G338390
TU384879 lncRNA upstream 4323 767019 ~ 767332 (+) True G338388
TU384875 lncRNA upstream 9576 761765 ~ 762079 (+) True G338384
TU384870 lncRNA upstream 16050 755337 ~ 755605 (+) True G338379
TU384884 lncRNA downstream 92 772070 ~ 772299 (+) True G338393
TU384885 lncRNA downstream 525 772503 ~ 772881 (+) True G338394
TU384886 lncRNA downstream 2329 774307 ~ 774563 (+) True G338395
TU384887 lncRNA downstream 3565 775543 ~ 775803 (+) True G338396
TU384888 lncRNA downstream 4540 776518 ~ 776748 (+) True G338397
CI01000120_00731213_00760512.mRNA mRNA upstream 10895 730980 ~ 760760 (+) False CI01000120_00731213_00760512
CI01000120_00704598_00707678.mRNA mRNA upstream 63160 704287 ~ 708495 (+) False CI01000120_00704598_00707678
CI01000120_00639875_00643491.mRNA mRNA upstream 128135 639051 ~ 643520 (+) True CI01000120_00639875_00643491
CI01000120_00612213_00613803.mRNA mRNA upstream 157425 612213 ~ 614230 (+) True CI01000120_00612213_00613803
CI01000120_00477162_00480891.mRNA mRNA upstream 290530 476999 ~ 481125 (+) True CI01000120_00477162_00480891
CI01000120_01093808_01118807.mRNA mRNA downstream 321830 1093808 ~ 1118807 (+) True CI01000120_01093808_01118807
CI01000120_01141788_01144915.mRNA mRNA downstream 369810 1141788 ~ 1145086 (+) False CI01000120_01141788_01144915
CI01000120_01194995_01221974.mRNA mRNA downstream 423017 1194995 ~ 1222463 (+) True CI01000120_01194995_01221974
CI01000120_01233281_01240955.mRNA mRNA downstream 460915 1232893 ~ 1241149 (+) True CI01000120_01233281_01240955
TU384877 other upstream 8012 763277 ~ 763643 (+) True G338386
TU384950 other downstream 92580 864558 ~ 865315 (+) True G338458
TU384956 other downstream 106833 878811 ~ 879593 (+) True G338464
TU385001 other downstream 235087 1007065 ~ 1009403 (+) True G338508
TU384999 other downstream 367862 1139840 ~ 1141663 (+) True G338506

Expression Profile