RNA id: CI01000127_01865774_01877178.mRNA


Basic Information

Item Value
RNA id CI01000127_01865774_01877178.mRNA
length 2622
RNA type mRNA
GC content 0.51
exon number 19
gene id CI01000127_01865774_01877178
representative True

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 1865774 ~ 1877244 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGTTCCTTGCCGGAGACCACACGCTCCCTCATGCAGATTTTTAATGGCAAACTGCAGGATTTTACCAATGAAATTGATAATGTCCACATGGTGTGGCTGGAGGAGATCCAGCAGGAAGCGTATCGCATGTTTTCCAGTGACTTCAGCACTGAGCCGGAGCTCATGCCAAAGACTCCATCACAGAAAAAGACAAACCGCAGGAAACGGGTGTCCATGGAGCTCAATGAGTCTCGCAGCAAAAGACGTTTCTCTAAGGGGAAACGCAGCAACTTGCGTCGCTCCTCGGTCCAGATGACCCTGAACTCCATCTCTGAGCTTGTTACGCCACATGTCCCGAATGACAGCTCCGAGAGCCTTATAGAGGAACCTGCTCGCCGCACGCGTCGCAACAAAACCACCGCTCCGGCTGAAACCGAACCCATCAAACGCAGCACCCGTAACAAAGGTGGCGCCAAAGCCAAGGAGGTGGAAGAAGTGGCAGAGAACATTCCAGCAGTGGAGGAACCTGTTGAGGTGCAGGATTCGGCCTCCAATCAGGATCGGATCCTGGTGTCTGAAGCTGTGGTGAAGATTCCCTCTTCGGAGCGTCTGAGTGCGGAGTTGATGCTGAATGCTGGTTTGTCTCCGGGCCGATCCGCCAATAAAATCCCCATTGCTGCATCCGGGTCGCAGACGACACCTCAGGGCCCGTCTCGGACGTCGGTTCGGCGTTCCCTGGTGATTCGCCGCTCACTGGTGGGCCTCAGGCATAGCATGACACAGGAAGCTGTTCGCAGGGCGTCCCGGCGCTCTTTCCTGAAGAAGAAAGCCAGACTGGGCAACTCGACCTGCAGCAGTTCTGTCAGCGAGGACATTTGTATGGACATTGAACCTGAGGACCTGGAGAACAAAGAGGAACAGGTTGATGCACCACAAAAGATGGCAGAACTGGCTACTGAAACCAGCCCTGAGCCTGAAATCATCCAATCTGAGGAACCTGAACCAGAGAAGACTGAAGAAGAGGAATCTGAGGTAAAAGACAAACTTCCAAAAGAGATTGCTGAATCTCCCAGCACTGTTGAGAACTGTCGCTTCACACGATCCATGGCTCGTACTTCAGAAACAGATGACGGTAGCGGTTCAAAGTCCAGAGGAGATGGCCGGCCTACACGTTCAGGCTCCAAGCGTCGGGCAGCTGAGTCAGCAATCCAGGAAATCGGCACACCGAAGAAGAAGCACTCTCCTCCGAAGAAATGCCTCACGAGTGTTGCTCCGCACATGCGCTCGTTCGTGCACACTGTGCAGAAGAACCAGATGCTGATGATGACACCTGGATCTCTGGGCCGCAGTAATATCATGAAGTCCTTCATCAAACAATCTGCCAGCAAAACTGACGTCAAGTTGGGCTCTGGCTCTGTGGAGCGAGAACGACAGAAGTGGGATGCCTTGAACAAGAAGATTGAACAAGAGAATGAACGAAAGAAAAAGATTGAGGAGGAGAGACGAAAGAAACAGGAAGAAATGAAAAGAAAGCGGGACGAACGTTTGAAGCGCGTTGTTGAGGCTCGAGTCAAAAGTGAAAAGGAGAAAGAGCAGGAAAAGAAAAAGAAGATTGAAGAAAAAATGGCACAGCTGGAGAAGAAAAATGACTTGCTGCGAGTTGAGCGGATGGCAGAGGAGAAAGCCAAGAGGAAAGTGGCCACTAAACGACAGGAAGAACTGGAGCTGCGCAAGAAACAGGAAGAGGCAGCCAGACAAAAGAAACTTCAGCAAGTTGAGGAAGAGGAGCGGCGGCACCAAGAAATGCTGGCCAAGCGCAAGGCTGAAGAGGAGCGAGAGAAGGCCCGCAAACTGGCAGAGGCCACACGCGCCCTGGAACTGAAGAAAGAACAAGAGCGGGAGAAAGAGGAGCGCGAACGGGAGCGGGAAAGAGAGCGGGAGCGAGAAAGACAAGCTGCAGCTGAGAAAGAAAGACTAGAGAAAGAGAAGGCTATCGCTCTTCAGAAAGAACTGGAGAGAGCAGCCAGAGAGAAAGAGAGGAGAGAGATGGAGGAGAAGAGGAAGATGGTCTCAAAAACACAAGCAGCTAGTATGCTCAACTCCACTATAACTAAGGGTTCAGCTCTGAACATGACTGTAGATATTGAGAACTCTGTTCTGAAAACTCCAGTTGGGAAAGGAGCCGCTCTGAATAAGACCATAGATCACGGAGCCGGACTCAACGTGACCGTTGACATTGAGCAATCTCCACAGTCCTACCAGATCACTCCTAAGGGCCAGAAGGTGACCGTTTTGGTCAATCCTGAAGATTATGGCATGGACCAGAACAGCGACGACTCAACAGATGATGAGTCAGCACCCAGAAAACCCATCCCATCCTGGGCTGAGGGTATGCAGTTGCAACAGTCTATAATGAAGCAATATTATAATCCACTGGATCTCAATTCCTATTTTGGAAAACCTGAACCACCCAAGCTGGAGGCGATCTTCAGGCGGACCAAACCTCGCTTCTTCAAACGCACTAGCTCGGCTGTCTGGCATTCTCCTCCACGTTTGGGAAATTTGGGCAATTAAGAAGCAAACTTTTCTACTTATGTCGTCTTTTTTATATGTTGTCTTTTATACATTGAACTCACTTTA

Function

GO: NA

KEGG:

id description
K11515 INCENP; inner centromere protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387686 lncRNA upstream 132646 1732896 ~ 1733128 (+) True G340695
TU387683 lncRNA upstream 134678 1730841 ~ 1731096 (+) True G340692
TU387674 lncRNA upstream 143073 1720638 ~ 1722701 (+) True G340685
TU387662 lncRNA upstream 198237 1667311 ~ 1667537 (+) True CI01000127_01668221_01681515
TU387658 lncRNA upstream 202283 1663277 ~ 1663491 (+) True G340678
TU387730 lncRNA downstream 31779 1909023 ~ 1914072 (+) True G340729
TU387766 lncRNA downstream 114133 1991377 ~ 1992555 (+) False G340760
TU387767 lncRNA downstream 114133 1991377 ~ 1992640 (+) True G340760
TU387770 lncRNA downstream 117018 1994262 ~ 1995843 (+) True G340761
TU387803 lncRNA downstream 166686 2043930 ~ 2044147 (+) True G340786
CI01000127_01820087_01824878.mRNA mRNA upstream 40658 1820087 ~ 1825116 (+) True CI01000127_01820087_01824878
CI01000127_01806520_01809286.mRNA mRNA upstream 56008 1805888 ~ 1809766 (+) True CI01000127_01806520_01809286
CI01000127_01799738_01802996.mRNA mRNA upstream 61898 1798624 ~ 1803876 (+) True CI01000127_01799738_01802996
CI01000127_01697668_01703795.mRNA mRNA upstream 161549 1697668 ~ 1704225 (+) True CI01000127_01697668_01703795
CI01000127_01683907_01690815.mRNA mRNA upstream 174569 1683323 ~ 1691205 (+) True CI01000127_01683907_01690815
CI01000127_01882281_01884037.mRNA mRNA downstream 3536 1880780 ~ 1884051 (+) True CI01000127_01882281_01884037
CI01000127_01932310_01942852.mRNA mRNA downstream 55066 1932310 ~ 1942990 (+) True CI01000127_01932310_01942852
CI01000127_01944313_01948146.mRNA mRNA downstream 67069 1944313 ~ 1948146 (+) True CI01000127_01944313_01948146
CI01000127_02036889_02038557.mRNA mRNA downstream 159645 2036889 ~ 2039521 (+) True CI01000127_02036889_02038557
CI01000127_02075266_02086856.mRNA mRNA downstream 198022 2075266 ~ 2087475 (+) True CI01000127_02075266_02086856
TU387432 other upstream 741624 1062786 ~ 1124150 (+) True G340487
TU387430 other upstream 761120 988203 ~ 1104654 (+) False G340487
TU387359 other upstream 1030731 834385 ~ 835043 (+) True G340421
TU387360 other upstream 1030731 830680 ~ 835043 (+) False CI01000127_00829615_00833490
TU386980 other upstream 1107384 756845 ~ 758390 (+) True G340122
TU387833 other downstream 300004 2177248 ~ 2177727 (+) True G340812
TU387980 other downstream 613314 2490558 ~ 2512877 (+) False G340939

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047371 True 2448 mRNA 0.50 18 NC_007136.7 3648497 ~ 3672560 (+)
bowfin (Amia calva) AMCG00006980 True 2283 mRNA 0.66 18 CM030123.1 66755 ~ 78412 (-)