RNA id: CI01000127_02104870_02106881.mRNA



Basic Information


Item Value
RNA id CI01000127_02104870_02106881.mRNA
length 1576
RNA type mRNA
GC content 0.53
exon number 2
gene id CI01000127_02104870_02106881
representative True

Chromosome Information


Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2104870 ~ 2107177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GACCACGCAAACCGGAGTTACAGTTTGGCATCATCGGTTCGGTTCACATTGCCGCCGGCCAGGTCACAGCGAGCGAGTGTACGAGACCGGGATCCACAGACCGGGCGGCCGGGACAAGAGCTGTGTGTGTCGGCAGAGAGACGCTCAGCATCAGCGTTCACACAATCAGAACTGACAGACTGAAACTGAAAGTTTGTGACTGTAATGTGATCGACGAGCTCTTGGCGAGCGGAGATCCCGTGTTGGACCTGAGCTACTACAAGTTCCGTCACCTTCCTCGTCAAGTCCTGGATCTGGAGTACCTGGAGAAGCTCTACGTCTGTGGAAACCGTCTCCGCAACGTCCCCAAGGGCATCACGCGGCTGCAGGGTTTGCGTACCCTGGCACTTGACTTCAATAAGCTCGAAGATGTTCCCCTCACTGTGTGCAAGCTGACCAATCTCACGTGTCTTTACCTGGGAAGCAACCGGCTTATGAGCCTCCCACCAGAAGTGAGGAACTTGCAGAGCTTACGTTGCCTCTGGGTGGAGAGCAACTACTTCCAGCGATTCCCCAAGCAGTTGTACGACCTTCCCAATCTACGCTCTTTGCAGATCGGGGACAACCGTCTGCGCACCCTTCCCTCGGACCTATGGCGCATGGAGGCCCTGAGAGGACTCTGGCTGTATGGAAACCGCTTTCAGGAGTTTCCGCGAGTGCTCCTCAAGATGGAGCAGCTGGAGATTCTGGACATGGACCGCAATCGGATATCAGAGTTCCCAAACTTGCATCATCTTCCTGCGCTGCGACTCTTCTCCTACGACCACAACCCTGTAAAGGAGCCGCCCCGTGTAGGGGAGGAGGTGCTTATTGTTGGGGAAGGGGCTGAGGAGGTCTTGCAGGCAAGAGAGAGAAGGAAAGAGGCAAAAGAACGTGCAGAGAAGGAAGCAGAGGAGGCGGCGGCCGCTGCGGCAGCAGCAGCTAATCCAGTCATTCACGGAATACTCAAGAAACTCCGAATGAGCTCCGCCCTCAACTTGGCAGCTGCTAAGGTGAAAGAAACAAATGGGTCGGGTCCATCAACAGGGGACGAGGACGGAACACAAAATAATGACAAAGAGGCGGAGTCTGAGAAACAAAGTGTGGCGGAGCTTGGGTATGACGATGACGGCTTGGAGTATGAAAGGGAGGAGCTAGTCTACGAGGGGGAGGGGTATGACGGCTACGAGGGGGCGGAGTTAGAGTATGAGAGAGCCGAAATGGATTATGAATATGAAGGGGAGGAGCAAGAAGAACCTTGATGCTCGCACCTCTTCTATGGGTCATGGTAGTCTGAAGTGTGTACTTTCTGCAAACAGAAATGCAGTTTGTTTCAACAGCCATCAGTCTTCAGCCAACATTCATTATTGTTTGCAACTCTGTGGTGCAGATGCTACACACTTCTGCTTTACTCATCTGAAGTATTACTGCAAGGGTTGCAGGTTCAATCCCAAGGATGAACTGGAGAGTAACTAAGAGTTATTGGGGCCCTGATAATGGCACTTAAGTAACCCCAGAATGCTTTATGGGGTAAAGAAAGCGACTGCAAGTCGCTCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU387783 lncRNA upstream 3625 2098772 ~ 2101245 (+) True G340771
TU387803 lncRNA upstream 60723 2043930 ~ 2044147 (+) True G340786
TU387770 lncRNA upstream 109027 1994262 ~ 1995843 (+) True G340761
TU387767 lncRNA upstream 112230 1991377 ~ 1992640 (+) True G340760
TU387766 lncRNA upstream 112315 1991377 ~ 1992555 (+) False G340760
TU387805 lncRNA downstream 2291 2109468 ~ 2115301 (+) False G340788
TU387806 lncRNA downstream 2291 2109468 ~ 2115301 (+) True G340788
TU387821 lncRNA downstream 43463 2150640 ~ 2153275 (+) True G340800
TU387861 lncRNA downstream 96163 2203340 ~ 2296340 (+) True G340836
TU387915 lncRNA downstream 190924 2298101 ~ 2299702 (+) True G340889
CI01000127_02075266_02086856.mRNA mRNA upstream 17395 2075266 ~ 2087475 (+) True CI01000127_02075266_02086856
CI01000127_02036889_02038557.mRNA mRNA upstream 65349 2036889 ~ 2039521 (+) True CI01000127_02036889_02038557
CI01000127_01944313_01948146.mRNA mRNA upstream 156724 1944313 ~ 1948146 (+) True CI01000127_01944313_01948146
CI01000127_01932310_01942852.mRNA mRNA upstream 161880 1932310 ~ 1942990 (+) True CI01000127_01932310_01942852
CI01000127_01882281_01884037.mRNA mRNA upstream 220819 1880780 ~ 1884051 (+) True CI01000127_01882281_01884037
CI01000127_02186896_02189070.mRNA mRNA downstream 79624 2186801 ~ 2189771 (+) False CI01000127_02186896_02189070
CI01000127_02195670_02218131.mRNA mRNA downstream 88318 2195495 ~ 2218779 (+) True CI01000127_02195670_02218131
CI01000127_02352702_02353332.mRNA mRNA downstream 245525 2352702 ~ 2353593 (+) False CI01000127_02352702_02353332
CI01000127_02443481_02466467.mRNA mRNA downstream 335721 2442898 ~ 2466969 (+) True CI01000127_02443481_02466467
CI01000127_02467913_02475731.mRNA mRNA downstream 360736 2467913 ~ 2476306 (+) True CI01000127_02467913_02475731
TU387432 other upstream 980720 1062786 ~ 1124150 (+) True G340487
TU387430 other upstream 1000216 988203 ~ 1104654 (+) False G340487
TU387359 other upstream 1269827 834385 ~ 835043 (+) True G340421
TU387360 other upstream 1269827 830680 ~ 835043 (+) False CI01000127_00829615_00833490
TU386980 other upstream 1346480 756845 ~ 758390 (+) True G340122
TU387833 other downstream 70071 2177248 ~ 2177727 (+) True G340812
TU387980 other downstream 383381 2490558 ~ 2512877 (+) False G340939

Expression Profile