RNA id: CI01000127_02467913_02475731.mRNA


Basic Information

Item Value
RNA id CI01000127_02467913_02475731.mRNA
length 1682
RNA type mRNA
GC content 0.47
exon number 11
gene id CI01000127_02467913_02475731
representative True

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2467913 ~ 2476306 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCGCGCAGGAGGTGGACGCGCAGCCAAGCGACACTCTGACGACGCTCAAAACCGAGTCCGAGACGCTGAAGACGAAGCTGGAGGAGGAGAGAGCCAAACTGCACGATGTCGAGCTACATCAAGTGGCGGAGAAGATTGAGGCGTTGGGTCAGTTTGTCATGAAGACCAGACGAACTCTGAAAGGCCATGGAAATAAAGTCTTGTGTATGGACTGGTGTAAAGACAAGAGGAGAATCGTCAGCTCATCTCAGGATGGAAAGGTGATTGTATGGGATGCATTTACAACAAATAAGGAGCATGCAGTGACTATGCCCTGTACGTGGGTCATGGCCTGTGCTTACGCCCCCTCTGGATGTGCAGTGGCTTGTGGTGGGCTGGACAATAAGTGCTCTGTGTACCCTCTATCCCTGGACAAGAACGAAAACCTTGCCGCCAAGAAGAAATCAGTGGCCATGCACACCAACTACCTGTCTGCATGCTGCTTTACAAACTCAGATATGCAGATCCTGACGTCTAGCGGTGACGGCACGTGTGCTCTTTGGGATGTGGAGAGCGGTCAGATGCTGCAGAGTTTCCATGGACACGCGGCTGATGTGCTGTGTCTGGACCTTGCCCCCTCTGAGACCGGAAACACATTTGTGTCAGGGGGCTGCGATAAGAAGGCCTGCGTGTGGGACTTGCGCACGGGACAGTGTGTCCAGTCTTTTGAGACTCATGAATCAGACATCAACAGCGTGCGGTACTATCCAAGCGGAGATGCTTTCGCTTCAGGCTCAGATGATGCCACTTGTCGTCTCTATGACTTGAGGGCAGACAGAGAGGTGGCCATTTATTCCAAAGAGAGCATCATATTTGGAGCTTCTAGTGTGGATTTCTCCCTCAGCGGGAGACTGCTGTTTGGTGGTTACAATGACTACACAATCAACGTATGGGACGTTTTAAAGGGCACCCGCGTGTCCATCTTGTTCGGACATGAGAACAGAGTTAGCACCCTCCGCGTCTCTCCGGACGGAACAGCGTTCTGTTCGGGATCTTGGGATCACACATTACGGGTTAGTGGAAAACATTTCTTAATACAGTATCTGGGCCTGAATGTTGCCTGAACCTCTTTCTCACTTTTATCGGCGCGGCTGGAATCGAGGAAACCGCAGACTCTAATAGTGTGTTGAGTGCAGTAGAGTATATGATACGGACAGACTGTAGTGCATCCACTTCCAGTTCTATTCGACACGGTCACTCCGTTTGCCCGTGCTTGGTATTATGGGATGGCCTTGGATGGTTTCTATGGCAGCAACTCCCGTTCTGTTCTAGTTTGTGTGTATGAACGTGTGTGAACACATTCCAACTTTGATCCAAGAAATAATTTATCTTAAACATTAATCTAAAAAATACAAATGTATTCCATGTTGTTTAGGTCTGTGCATGAGGTCGAGGGTCAACAAAGATTATTAACCAGAGTGAGGACTTGAATCATTGTTAACGAGCGAAACAGGAAAGATTGTTTAGCGGACACTATATCTGATATGCAAGATAACAGATTTAGTTATACTCTCTTACTCATAATGGTCATTTAATTATTATGCCACTATAGTTGTTCTTTCTTACTGTAGCAAAGTGTATATACCATAATATCATATAGGTTGTCATATGGACACAGATATCAATATACATAAACTAA

Function

GO:

id name namespace
GO:0051087 chaperone binding molecular_function

KEGG:

id description
K04539 GNB5; guanine nucleotide-binding protein subunit beta-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387968 lncRNA upstream 28491 2439206 ~ 2439422 (+) True G340930
TU387967 lncRNA upstream 32164 2435219 ~ 2435749 (+) True G340929
TU387945 lncRNA upstream 78060 2374056 ~ 2389853 (+) False G340912
TU387946 lncRNA upstream 78060 2388379 ~ 2389853 (+) True G340912
TU387941 lncRNA upstream 84050 2354416 ~ 2383863 (+) True G340908
TU387982 lncRNA downstream 14972 2491278 ~ 2492028 (+) True G340940
TU387979 lncRNA downstream 24746 2501052 ~ 2512877 (+) True G340939
TU387989 lncRNA downstream 44723 2521029 ~ 2521255 (+) True G340946
TU387993 lncRNA downstream 49757 2526063 ~ 2526287 (+) True G340950
TU387998 lncRNA downstream 50537 2526843 ~ 2529730 (+) True G340952
CI01000127_02443481_02466467.mRNA mRNA upstream 944 2442898 ~ 2466969 (+) True CI01000127_02443481_02466467
CI01000127_02352702_02353332.mRNA mRNA upstream 114320 2352702 ~ 2353593 (+) False CI01000127_02352702_02353332
CI01000127_02195670_02218131.mRNA mRNA upstream 249134 2195495 ~ 2218779 (+) True CI01000127_02195670_02218131
CI01000127_02186896_02189070.mRNA mRNA upstream 278142 2186801 ~ 2189771 (+) False CI01000127_02186896_02189070
CI01000127_02104870_02106881.mRNA mRNA upstream 360736 2104870 ~ 2107177 (+) True CI01000127_02104870_02106881
CI01000127_02477517_02488780.mRNA mRNA downstream 1211 2477517 ~ 2489109 (+) True CI01000127_02477517_02488780
CI01000127_02532996_02543896.mRNA mRNA downstream 56690 2532996 ~ 2543950 (+) True CI01000127_02532996_02543896
TU387833 other upstream 279149 2177248 ~ 2177727 (+) True G340812
TU387432 other upstream 1343763 1062786 ~ 1124150 (+) True G340487
TU387430 other upstream 1363259 988203 ~ 1104654 (+) False G340487
TU387359 other upstream 1632870 834385 ~ 835043 (+) True G340421
TU387980 other downstream 14252 2490558 ~ 2512877 (+) False G340939

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047401 False 1413 mRNA 0.50 11 NC_007136.7 4837915 ~ 4851181 (+)