RNA id: TU387783


Basic Information

Item Value
RNA id TU387783
length 321
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G340771
representative True

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2098772 ~ 2101245 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTTCTTCTATGTGTGTTAAATGTAAATATGTTTTACCGTTGCATCTTCTCCAGCATGGTGGCCGAGGATCCTGAGTCCTCCGGGGTGTTTCTTCACCCACTGGCTCACATTATAAACCTTCCTTTCAACCACAATCCACTGATCTCCAGACTTGGTGTGTTTCTGCACCTCCTCCCAGGTGTAAGCGCTGAACCTCCCATTGGTCCCGGTGATCCGGTCCGTCTGCTGTCCTCCTCCGCCCATCACTGATCAAACACTGACTGCTGCTTACTTTGCACTGTAAGACCTTCTCTGCAAGGACTTTGATCACACACTCATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387803 lncRNA upstream 54625 2043930 ~ 2044147 (+) True G340786
TU387770 lncRNA upstream 102929 1994262 ~ 1995843 (+) True G340761
TU387767 lncRNA upstream 106132 1991377 ~ 1992640 (+) True G340760
TU387766 lncRNA upstream 106217 1991377 ~ 1992555 (+) False G340760
TU387730 lncRNA upstream 184700 1909023 ~ 1914072 (+) True G340729
TU387805 lncRNA downstream 8223 2109468 ~ 2115301 (+) False G340788
TU387806 lncRNA downstream 8223 2109468 ~ 2115301 (+) True G340788
TU387821 lncRNA downstream 49395 2150640 ~ 2153275 (+) True G340800
TU387861 lncRNA downstream 102095 2203340 ~ 2296340 (+) True G340836
TU387915 lncRNA downstream 196856 2298101 ~ 2299702 (+) True G340889
CI01000127_02075266_02086856.mRNA mRNA upstream 11297 2075266 ~ 2087475 (+) True CI01000127_02075266_02086856
CI01000127_02036889_02038557.mRNA mRNA upstream 59251 2036889 ~ 2039521 (+) True CI01000127_02036889_02038557
CI01000127_01944313_01948146.mRNA mRNA upstream 150626 1944313 ~ 1948146 (+) True CI01000127_01944313_01948146
CI01000127_01932310_01942852.mRNA mRNA upstream 155782 1932310 ~ 1942990 (+) True CI01000127_01932310_01942852
CI01000127_01882281_01884037.mRNA mRNA upstream 214721 1880780 ~ 1884051 (+) True CI01000127_01882281_01884037
CI01000127_02104870_02106881.mRNA mRNA downstream 3625 2104870 ~ 2107177 (+) True CI01000127_02104870_02106881
CI01000127_02186896_02189070.mRNA mRNA downstream 85556 2186801 ~ 2189771 (+) False CI01000127_02186896_02189070
CI01000127_02195670_02218131.mRNA mRNA downstream 94250 2195495 ~ 2218779 (+) True CI01000127_02195670_02218131
CI01000127_02352702_02353332.mRNA mRNA downstream 251457 2352702 ~ 2353593 (+) False CI01000127_02352702_02353332
CI01000127_02443481_02466467.mRNA mRNA downstream 341653 2442898 ~ 2466969 (+) True CI01000127_02443481_02466467
TU387432 other upstream 974622 1062786 ~ 1124150 (+) True G340487
TU387430 other upstream 994118 988203 ~ 1104654 (+) False G340487
TU387359 other upstream 1263729 834385 ~ 835043 (+) True G340421
TU387360 other upstream 1263729 830680 ~ 835043 (+) False CI01000127_00829615_00833490
TU386980 other upstream 1340382 756845 ~ 758390 (+) True G340122
TU387833 other downstream 76003 2177248 ~ 2177727 (+) True G340812
TU387980 other downstream 389313 2490558 ~ 2512877 (+) False G340939

Expression Profile