RNA id: TU387806


Basic Information

Item Value
RNA id TU387806
length 4130
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G340788
representative True

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2109468 ~ 2115301 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTAAATTAATATTTCTTAACTTTCTGAATGCTATTAATTCATATAATTACTATTAATATTGAACATCAAACTGGTTTCTTAGCATTTTCTTTACACAAATTAGCCGATAGTGTGAAAATTTGCTTTTACTGACCGATACCGATTATTGGCCGATATATCGGTGCAGATAAGATTCTATATAATGTATATTGTTTTTGTTTGACAATATTTGATACATATATATCTTTGACAATATTTGATTTTCCCAAATAGATTCAAATGTTCAATGTCAACACTAAAACAAAGTAAAACTCTAGTTAAAATTAAACAAGGCTTTTTGCAAAATGAAACTGATTAATAACAATATTTAATTACATATATTTTCACAAAAAACATAGTGGCTAAACATTTTGTCAGATATACAATCAGACCCTTGAATTGATTCATTGAAACTGATTCAGAGAAATAAATCAAAATGACCCAAAAAATCATCACAAGAATATTTTCAATATTCAAAATATATTTCCAAGTCCCAGCCTTGACCATGCAGGAAAAATCCCACACTAAAGTTTCTAGAAGGCAAATTAAATTTCTGAATTTAGTGAGTTTCCACTAAGAATCCTAGCTGTCTGGCTGTGGAGCAGCACTGACATGATCTGAGACAGATGGGAAGAGCTAGCCAAGCTAGCACTAATAGAAGTAAATGTTCTCTCTCGTCTTTTGCTTGAAGGACTCGATGTGCGAAAGTTAGAGAGGAGGCGTGTGGACAGAAGAGAAACATCAGGGAGAGAACAGTAGTGGGGGTGCGCTCCATAAAAGGCCTGGGTCGTTAGTCAGTGATTTGGGAGAAAGACTGAGAGAGAGCAGCGCTTAATGTGTAAATGATGAGGTCCCAGAACAAAGACTGTAACAGATCCAGCAGGTTTGTGGGTTGGGTGATGGTATAAAAATGAAAATAGTGTTTAACACCAAATTAACACTGCAGACGAGCCAAAATTCGCAATTGCGAGTTATAAAGTCGGAATTGCATGTTATTAAGTCAGAATTGCATGTTATTAAGTCAGAATTGCGTGTTATAAAGTCAAAATTGCGAGTTATAGTTAAAATTGCATGATATAAAGTCAGAATTGCAAGTTATAGTCAGAATTGCGAGATATAAAGTCAGAATTGCGTGATATAAAGTCAGAATTGCGAGTTATAGTTACAATTGCCTGATATAAAGTCAGAATTGCAAGTTTTAAAGTCAGAATTGCGTGATATAAAGTCAGAATTGCGTGATATAAAGTCGCAATTGCGAGTTATAGTTACAATTGCCTGATATAAAGTCAGAATTGCGAGATATAAAGTCAGAATTGCGAGTTACAGTTAAAATTGCGTGATAATTTTGTGTGCCAATTCTGACTTTATAACACGCAATTGCAAGTTTAAATCTCACAATTGTGAGAAAAAAGTCGCAAAAAGTTTCAAATCTGTTTTTTATTTTTTTATTTAGAGGCAGAAACAAGCTTACATGCAAAACTGCCTTTAATTCACCTTTTGTGTTCTACAGAAGAAAGTCATACTTTCTCAAAACTATTTGTTACAAAACACTTAAGTGAAACAATGAAGAAATAAATCTTTTGAATTATAGAGGTCATCTGTAGAAATCACTGCCCTCCAATTTGCATTTTCCTCATTTGTTCATTCTTTCCCTCCGATATCAGTCTTATATGTACCTACTTTTCTATTCCATTCACATCTGCCAACTCTCTTATTCTAGTCAAGAAGTGTTTTTATTGCCCTTTCCTCCTCCTTCCCGTTTTCTTCCTTCATCAATCATTGTGCTGTTTAAATTTTCTCTCCATCTCCTGTCACTTCTCATCTCTCCCTGAGAGTGTCGAATCCCATCTGTTAAAATATTTACGTAATGCTATGAGTCTGTCATTATTGCTGCGAAGAGTCTAAAACAAGTGTTTTGGCACAACCTGTGACAGGAAGTGGAGAAAAGCGTGTCTCCGCCCAGATCTCCACTCCAGAATCAACACAACCCATCACGCAAATGTGCACAGCTCAGGTGTCTTTAAAACAGCCAGTTTTCAATTCGCAAAAACTTTTTTATTCATCTGCAAATGTGCAAATACCTACAGTATTTTATTGTGAGATCTCAGATACTTTGAGCAAGGCAAAAAGACTGGCAGATGAAAATAAAGGAAGTCTTTGCAAAGTGAAACTTGGCTGTTTCAAAGACATCTGAGCCATTTGCGTATATGACGGGATGGGTTGTGTTGACTCTGGCAGGTAGATCTGCGATCTCTTTCAGCTATAAAAGACATTGAACAATGGATCAAAAAGTGGTTTGATGGTTGCTGAAGTGTTGCAGGTTTTGTATTTTAAGGTAAACAGGCTCTGCCTTTCTTTAAAACTTACCATTTGTGGTATTTACTAAAACAAGAATGACTATTCGCTTGTTAAGTTGTGACGTAAGGAATACTGTTTCCTTGTACAAGCCTCTACTTATAACAATTGAGAATACTATTTCAACAACCATTTGTATTCATATCACACATTTAAGCTTAGCATGTAAGAAATTCACACTGTACGCTACAGTCCCCAGGCTCACGGCATCCCAGACACCAATATTTTAATGATTCATAAAAGATGAATCACTGTATGAGATTTCAGTATGGAGATAAAAGTTAGGATCATTATTTTTCAGTAGTATTAAAGCACACAATGAATGTACCTTAGCACTGTTTGTTGTTTGATTTTGGCAGTTGATAGAGCATTTGGTCCCGGAAATAGATCCAATGTCAGACTGAAACAGATTACAGTTGCTCAAACTTCGGGTTAGTGATTCGAACAAACCCGTAACCAAAATTATTAAGGCTCGTTTAAACCAAGAAAGATAACTATAAAGATAACTATATTTGCGTCCACACCAACGAACGATAACAGTCTGTTTATTCTAAACGCATGCGCTGCAGTTTCAAAGTGTGTACAACATGTTTTTACTGTTCATACTGCATTTACACAGCTTTAACCAGTAGATGTCCTCAGCATGCTATGTTTCGAGTGAATAGCTAGTGTAATCGATCTAATCTAACAGTGAATTTAGCTGACAAAGTCAATATAGTGGAATAAAAACAACACCTAGTCTTTTTCACTGCAGCTTCAAAGGAAGCAAGACGATGTTGTCGAAACTAGCGCTGGATACCTGAGGTAATTTTATGTTACACTGTCAAAATGATCTTATCGTTAATACTTCTCACCATTTATTCCGAGGGTATGACCGATTGTTTTTCATATATCCATTTTCTTTAAAGTATCCTTGAAAAGGGGGATTGAATTGTCAAACAGTGGTGGCTTTTTCTGTACCTCAGCGATAAACTTCTCCGCAATGTCGTCCGCCATTTTAAAAGCGCGAGCCCTTAAATTAGAGCGGATTCTGATTGGCTCTCAGTGTTTTATCATTCAACAGCTGGAAAAAAAATTGTTCTGAAAGTGATCCCAGCGATATTATTTCTCTATATCGTTATAGTTGTGGGTGTGGACAGTGCTATCCTTTTATATTTAGAATAATTTTTAGTACTATATCATTATCATTATAGTTATCGTTCTTGGTGTGAATGGCCCTCAACTCGTCCCGTTTGTGTTACAGACATGAATGACACCTCAAATTTGCTTGGCAGACAAAAAAAACAATATGAAAACAAAAAATGACAAAGGAGACAACTAAGAATAGCACAGAACATGTCTAATAATCTCTCATCTCAAAAGATTTGATTTCTTATTATACGACATCTTTAAAGGCATACTGTAAGTCTGGCTCAGAGATTTTGGCATAGCTCTTAGCCCTGGATTCTCAGGCGCCAAGTATCGAGTATCTGTGGAGCGCTCTGACACAGTCCAGGCCTGAGGAGGAGAACATAGTCTCTGTGCTTAATCATTTAGCAGCTTACTGCTAGTTTACGTTAACGCCATTCTCTCAAGGTCAGCCGCATAGCAAGCCGTGAATGAGCACCGGACTGCCTCTGCGGCGCTTGAAACTTCATACCCTTGTTACAGGCACTCACAGTAATATCTCTGTCACTGCCAGATCTCAGCAGAAGTCATCTGGTGTCTGAAATGTAATCCGAGCCATTGTGACAGCGTGTCAGCACAAGAGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387783 lncRNA upstream 8223 2098772 ~ 2101245 (+) True G340771
TU387803 lncRNA upstream 65321 2043930 ~ 2044147 (+) True G340786
TU387770 lncRNA upstream 113625 1994262 ~ 1995843 (+) True G340761
TU387767 lncRNA upstream 116828 1991377 ~ 1992640 (+) True G340760
TU387766 lncRNA upstream 116913 1991377 ~ 1992555 (+) False G340760
TU387821 lncRNA downstream 35339 2150640 ~ 2153275 (+) True G340800
TU387861 lncRNA downstream 88039 2203340 ~ 2296340 (+) True G340836
TU387915 lncRNA downstream 182800 2298101 ~ 2299702 (+) True G340889
TU387916 lncRNA downstream 191658 2306959 ~ 2316097 (+) False G340890
TU387918 lncRNA downstream 194929 2310230 ~ 2316097 (+) False G340890
CI01000127_02104870_02106881.mRNA mRNA upstream 2291 2104870 ~ 2107177 (+) True CI01000127_02104870_02106881
CI01000127_02075266_02086856.mRNA mRNA upstream 21993 2075266 ~ 2087475 (+) True CI01000127_02075266_02086856
CI01000127_02036889_02038557.mRNA mRNA upstream 69947 2036889 ~ 2039521 (+) True CI01000127_02036889_02038557
CI01000127_01944313_01948146.mRNA mRNA upstream 161322 1944313 ~ 1948146 (+) True CI01000127_01944313_01948146
CI01000127_01932310_01942852.mRNA mRNA upstream 166478 1932310 ~ 1942990 (+) True CI01000127_01932310_01942852
CI01000127_02186896_02189070.mRNA mRNA downstream 71500 2186801 ~ 2189771 (+) False CI01000127_02186896_02189070
CI01000127_02195670_02218131.mRNA mRNA downstream 80194 2195495 ~ 2218779 (+) True CI01000127_02195670_02218131
CI01000127_02352702_02353332.mRNA mRNA downstream 237401 2352702 ~ 2353593 (+) False CI01000127_02352702_02353332
CI01000127_02443481_02466467.mRNA mRNA downstream 327597 2442898 ~ 2466969 (+) True CI01000127_02443481_02466467
CI01000127_02467913_02475731.mRNA mRNA downstream 352612 2467913 ~ 2476306 (+) True CI01000127_02467913_02475731
TU387432 other upstream 985318 1062786 ~ 1124150 (+) True G340487
TU387430 other upstream 1004814 988203 ~ 1104654 (+) False G340487
TU387359 other upstream 1274425 834385 ~ 835043 (+) True G340421
TU387360 other upstream 1274425 830680 ~ 835043 (+) False CI01000127_00829615_00833490
TU386980 other upstream 1351078 756845 ~ 758390 (+) True G340122
TU387833 other downstream 61947 2177248 ~ 2177727 (+) True G340812
TU387980 other downstream 375257 2490558 ~ 2512877 (+) False G340939

Expression Profile