RNA id: TU387861


Basic Information

Item Value
RNA id TU387861
length 2637
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G340836
representative True

Chromosome Information

Item Value
chromosome id CI01000127
NCBI id null
chromosome length 2607226
location 2203340 ~ 2296340 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTATTATTATTTATTTTTTTTTTTTTTACATAACGAAAAATTAAAGGTTCCTTAATTTTCTTAATATAACATATATTCTCATTTTTTATTTTTTTAAGAGGTAAAATATGACCAGGACATGTTTTCGTGAGACTCAGCCGTGTTTATGTATTTTGATAATTTCTTAATTATTGCATAAATATGTGCTGGTCCTTCTATATATACTCTTCATTACATGAAGAGTGAAATCACAAATATCTAACATCTAATTTACTACTAAATAAGATCGAATACTATCAATTTACATCGATTATATGATTCAAAGATACATTCTCTGGTTTGTCGAAACAAACAGGCGATACGTTGCTTATAATATGTGTCGTCTAGTATATTGAATATTGTACGATATCAAAGGGGCGTGTGAGTATTGCGCTTGTGCCAGATCTGTTTTTGTGCTTGGATTGTAAAATCATCAGTGCTATTTTTGGTGTTTTTTGCCACCTGCTGTCTAATTCCTTCAAGTACAAGGAAAGGAAGAAGGACAGATGGTGAAAACGAGGGAGAGAGTGAATAACACACTTTAGTGTTACATAAATGAGGAAGAAGAAACGCACGACACGCTCAATTACACCAGTGCGCACCATTGACCCCTCACACAACACACGACCGTTCACAAACACAACAAGCTCACAGCTCATAAAACATGACGGAAATCAGAGGTACGATTAAAAAAAATACAATTTAGAAAACAAAAACAGTCTAAACAAGACTAAATCATCATAATCAAAGCAAAACAACAGAAAACAATCATCACAATACTAAAAATAATCACAGATCGTAAGATAGCTTTTGGAATGTTTAGGAAAAAACCAATACAAGGCAAAACAAGGTCAGATTCAAATTAGGCATAAAACTTACTTCCATTTTAATACCATTTGCAACAATTAACGATATGTGAGGTAACCGGTCAGAAGGGTTATGCATGTGTTGACCTTGTAAAGTCCGACCTATGACCTTTAAACAATAAATAAGAGCATCTGAACAGTTTTAAATGGCATAAAGCTCATTGTCACAGAGACTAGAGATGTTTACTTGTTAGACAGCACCATAAAACCCTCTTGACCTCAAGCTAATGAATACTTAGCATCATTTTCTTATTAATTAGTGATATTCTAGAGTACACTGAGTGTTTGAGAGTTTGGGGTCGGTAAGATTTTTTAAAAGAAGCATTTATTTGATCAAAAATACTGTAAAACAGTGATATATTATTATAATTTAAAATAATTGTTTTCTGTTTGAATATATTGTAAAATGTAATTTATTCCTGTGCTGCAAAGCTGAATTTTCAGCATCATTCAACATTTTATATTTAGTGCAAGTTTTTAAAATATTACAACATTTTAAATAGTTTTATAGAGGTTGTACCGAATGACCTGATGCGTATGCGAGATGTTTCAGAAAGTGGTGGGGACAATATTGACCCTGGCAAAAAGTGGTGGGGACATTTCCCACCCGTCCCACCCGCAAATTACGCCTATGTATCCAGGGCTTGACATGAACTGAGGCTAGTGGTTTTCCAACCACTCAGTATTTTCACTGGACACAGTTTTGACATCGATACCATGGGAAAAAACTGCCTTATAGATATTTTTAATATTACCTCATAATTTGGCAGCAGGTTTATTAGGCTGCTGTCACTTTAAGACCTGATGCACGGATCCATTATACTGTTACACAAGCGTTTTCTTTCTCAACTGTTTACGTTCACTTAAAACATAACTGACTGTGTTTACGTGAATACTTGCCAAGACCGGCATTTTGACATTATTTTGTGTGTATTTGACTGTTTAAGCGCAATAAGCAGTGAAAAAGAACTCAGTTTAGTACTGAGAGGCAGCTTTATGTGTGCCGCACTTTGGGTGTGATGATAAAATCTGTGGGAATGAGTAAAATTATGCGCAATATACGCAATCCCATGTTGAAATTCAAGCTCTGTAACACCAGCAATATTCATCCGGAGCAAATGAAACAAGTGAGTGACGGGAGGCGGGTTTGTGTGTCGACTCGCTGTCGGAGAGATGAGAGAGCGACAGCTGATATTGTGTATCTATTCTGCAGAAGCATCAGATACTTCAGTGTCGATATATATTGAAAAATTTATATTTTTGACAACACTACATTGCACTTAGTTTATTATTTCAGATGCCTTTTTAAAAGACAACAATGTACATATTATATATAAAATTTAATATTTTTGTTGTTTTGTTGTCGTTGTTAATGTCAAGCTCTAACCATGTCAATTCACATTGACCATGATTATAAGGGGTGGTTTAATCCTTTTCTAAAACATTCAATAGAAGCTTGTGACATATAAACACGCACATCAACCCAATCACTATATTTTACATTCAAATACACCCGCTGCAATGTGGCGTCAGGCACGATGCAAGCTAGTTTCAGCCCAACGCAGTTATCATTTTCACGTCCTGCACTGCGTTGTTTAAATAGCAAATGCATTTGCGCCCATTTGTGTGCCCATGGGCGTGCTGGTCTGAAAAAGAGCTGTGTTCGGGTGCATTGTTGGCGTGTTGCTATTTTGAGGGAACTGAAATAGACTGCGCCATTGACCAACTGAAACCTGGTCTAAAGTCAATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387821 lncRNA upstream 50065 2150640 ~ 2153275 (+) True G340800
TU387807 lncRNA upstream 86046 2044950 ~ 2117294 (+) True G340789
TU387805 lncRNA upstream 88039 2109468 ~ 2115301 (+) False G340788
TU387806 lncRNA upstream 88039 2109468 ~ 2115301 (+) True G340788
TU387783 lncRNA upstream 102095 2098772 ~ 2101245 (+) True G340771
TU387915 lncRNA downstream 1761 2298101 ~ 2299702 (+) True G340889
TU387916 lncRNA downstream 10619 2306959 ~ 2316097 (+) False G340890
TU387918 lncRNA downstream 13890 2310230 ~ 2316097 (+) False G340890
TU387920 lncRNA downstream 16491 2312831 ~ 2316097 (+) True G340890
TU387926 lncRNA downstream 22789 2319129 ~ 2319452 (+) True G340895
CI01000127_02186896_02189070.mRNA mRNA upstream 13569 2186801 ~ 2189771 (+) False CI01000127_02186896_02189070
CI01000127_02104870_02106881.mRNA mRNA upstream 96163 2104870 ~ 2107177 (+) True CI01000127_02104870_02106881
CI01000127_02075266_02086856.mRNA mRNA upstream 115865 2075266 ~ 2087475 (+) True CI01000127_02075266_02086856
CI01000127_02036889_02038557.mRNA mRNA upstream 163819 2036889 ~ 2039521 (+) True CI01000127_02036889_02038557
CI01000127_01944313_01948146.mRNA mRNA upstream 255194 1944313 ~ 1948146 (+) True CI01000127_01944313_01948146
CI01000127_02352702_02353332.mRNA mRNA downstream 56362 2352702 ~ 2353593 (+) False CI01000127_02352702_02353332
CI01000127_02443481_02466467.mRNA mRNA downstream 146558 2442898 ~ 2466969 (+) True CI01000127_02443481_02466467
CI01000127_02467913_02475731.mRNA mRNA downstream 171573 2467913 ~ 2476306 (+) True CI01000127_02467913_02475731
CI01000127_02477517_02488780.mRNA mRNA downstream 181177 2477517 ~ 2489109 (+) True CI01000127_02477517_02488780
CI01000127_02532996_02543896.mRNA mRNA downstream 236656 2532996 ~ 2543950 (+) True CI01000127_02532996_02543896
TU387833 other upstream 14576 2177248 ~ 2177727 (+) True G340812
TU387432 other upstream 1079190 1062786 ~ 1124150 (+) True G340487
TU387430 other upstream 1098686 988203 ~ 1104654 (+) False G340487
TU387359 other upstream 1368297 834385 ~ 835043 (+) True G340421
TU387360 other upstream 1368297 830680 ~ 835043 (+) False CI01000127_00829615_00833490
TU387980 other downstream 194218 2490558 ~ 2512877 (+) False G340939

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049161 False 7168 lncRNA 0.32 3 NC_007136.7 4452849 ~ 4460610 (+)
tiger barb (Puntius tetrazona) TU245430 True 2623 lncRNA 0.33 1 NC_056723.1 2864948 ~ 2867570 (-)