Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU387915 |
| length | 1571 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G340889 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000127 |
| NCBI id | null |
| chromosome length | 2607226 |
| location | 2298101 ~ 2299702 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU387861 | lncRNA | upstream | 1761 | 2203340 ~ 2296340 (+) | True | G340836 |
| TU387821 | lncRNA | upstream | 144826 | 2150640 ~ 2153275 (+) | True | G340800 |
| TU387807 | lncRNA | upstream | 180807 | 2044950 ~ 2117294 (+) | True | G340789 |
| TU387916 | lncRNA | downstream | 7257 | 2306959 ~ 2316097 (+) | False | G340890 |
| TU387918 | lncRNA | downstream | 10528 | 2310230 ~ 2316097 (+) | False | G340890 |
| TU387920 | lncRNA | downstream | 13129 | 2312831 ~ 2316097 (+) | True | G340890 |
| TU387926 | lncRNA | downstream | 19427 | 2319129 ~ 2319452 (+) | True | G340895 |
| TU387927 | lncRNA | downstream | 19871 | 2319573 ~ 2319855 (+) | True | G340896 |
| CI01000127_02195670_02218131.mRNA | mRNA | upstream | 79322 | 2195495 ~ 2218779 (+) | True | CI01000127_02195670_02218131 |
| CI01000127_02186896_02189070.mRNA | mRNA | upstream | 108330 | 2186801 ~ 2189771 (+) | False | CI01000127_02186896_02189070 |
| CI01000127_02104870_02106881.mRNA | mRNA | upstream | 190924 | 2104870 ~ 2107177 (+) | True | CI01000127_02104870_02106881 |
| CI01000127_02075266_02086856.mRNA | mRNA | upstream | 210626 | 2075266 ~ 2087475 (+) | True | CI01000127_02075266_02086856 |
| CI01000127_02036889_02038557.mRNA | mRNA | upstream | 258580 | 2036889 ~ 2039521 (+) | True | CI01000127_02036889_02038557 |
| CI01000127_02352702_02353332.mRNA | mRNA | downstream | 53000 | 2352702 ~ 2353593 (+) | False | CI01000127_02352702_02353332 |
| CI01000127_02443481_02466467.mRNA | mRNA | downstream | 143196 | 2442898 ~ 2466969 (+) | True | CI01000127_02443481_02466467 |
| CI01000127_02467913_02475731.mRNA | mRNA | downstream | 168211 | 2467913 ~ 2476306 (+) | True | CI01000127_02467913_02475731 |
| CI01000127_02477517_02488780.mRNA | mRNA | downstream | 177815 | 2477517 ~ 2489109 (+) | True | CI01000127_02477517_02488780 |
| CI01000127_02532996_02543896.mRNA | mRNA | downstream | 233294 | 2532996 ~ 2543950 (+) | True | CI01000127_02532996_02543896 |
| TU387833 | other | upstream | 109337 | 2177248 ~ 2177727 (+) | True | G340812 |
| TU387432 | other | upstream | 1173951 | 1062786 ~ 1124150 (+) | True | G340487 |
| TU387430 | other | upstream | 1193447 | 988203 ~ 1104654 (+) | False | G340487 |
| TU387359 | other | upstream | 1463058 | 834385 ~ 835043 (+) | True | G340421 |
| TU387980 | other | downstream | 190856 | 2490558 ~ 2512877 (+) | False | G340939 |
